Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq290 253 3e-62 seq14 219 6e-52 >seq290 Length=58723 Score = 253 bits (280), Expect = 3e-62 Identities = 607/906 (67%), Gaps = 14/906 (2%) Strand=Plus/Plus Query 46318 TCTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTT 46377 |||| || |||||| || || ||||| ||| || | ||||| || || ||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 46378 TTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAttttt 46437 || || |||| || || || |||||||| || || ||||| ||| |||| |||| ||| Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 46438 ttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATT 46497 | | |||| || | || || ||| || ||| |||||| | ||| |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGCACAGAATTCAACATAATGGGCCATCATA 52955 Query 46498 TCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTA-AGAAACTCTTGTTCAAT 46556 || | ||||| || | | || || ||||| || | ||||| |||| | |||| Sbjct 52956 TCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAAT 53014 Query 46557 AGTGACAGCATCCGATATTATCGATGTTACTGTTT-CCTCACTTGGTGGATGCATCAAAT 46615 | ||||||| || | || || | ||| | | ||| ||| ||||||||| |||||| Sbjct 53015 ATTGACAGCCTCGGTCATAATTT-TCTTAATAATAACCTTACTAGGTGGATGCTTCAAAT 53073 Query 46616 GTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGT 46675 | |||| | ||||| |||||| ||| || || ||||| || | ||| | || | Sbjct 53074 GAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCAT 53133 Query 46676 TAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG 46735 | || || || || |||||||| | || | ||| || | ||| || |||| || || | Sbjct 53134 TGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACG 53193 Query 46736 ATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG 46795 | ||||| ||||| | || || | || || || ||||| | |||||| | || | Sbjct 53194 AGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAG 53253 Query 46796 CATCATTATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTG 46852 |||||| || ||||| || |||||| |||||||| ||| | | || || | Sbjct 53254 CATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGG 53313 Query 46853 TTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA 46912 | | |||||||| || | ||| || | | || | | || || || | || Sbjct 53314 TATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTA 53373 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 |||| || | || || || ||||| |||| ||||| || |||||||| || Sbjct 53374 AAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTC 53433 Query 46973 TTGCTTCAG-TAATCTGTACCT-CTGTACAAAATCGTTCAGACAAATTCTCATTCACTAT 47030 ||||||| | |||| || |||| || | |||| || | ||| ||||| | || || Sbjct 53434 TTGCTTCTGGTAAT-TGAACCTGCTTCATGAAATT-TTGTGCCAAGTTCTCGTCAACAAT 53491 Query 47031 TCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGT 47090 |||||| ||| |||||||||||||| ||| | ||||| ||| | || | || | | Sbjct 53492 ACCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATT 53551 Query 47091 CA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAA 47147 || || ||||||||| | | || || || | ||| | || ||||| ||||| || Sbjct 53552 CATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAA 53611 Query 47148 TGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAAC 47207 || ||||| || || |||||||| | |||||||||| || || || || || || || Sbjct 53612 AGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCAC 53671 Query 47208 AAATCT 47213 |||||| Sbjct 53672 AAATCT 53677 >seq14 Length=27313 Score = 219 bits (242), Expect = 6e-52 Identities = 1356/2141 (63%), Gaps = 60/2141 (3%) Strand=Plus/Plus Query 75373 CAACG-TGAACTGAATGGGA-GAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTT 75430 ||||| |||| || |||| | ||| | || | | |||||| | ||||||||||| || Sbjct 16360 CAACGGTGAATTGGATGGCACGAGCA-GCGGCCTGTGTACGCAAGTAGTACATACCTGTC 16418 Query 75431 TTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGA-ATAACTCG-GAT 75488 || | |||| |||| ||||| || |||||| || | || ||| | | ||| Sbjct 16419 TTCAAACCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTACCCATAGTTGGCGAT 16478 Query 75489 CGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCA 75548 | | || || ||||| || ||| || ||| | || ||||| || || |||| Sbjct 16479 TGC--AAGTGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCTCTGTCGGCAGCCA 16536 Query 75549 TTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCAT 75608 | | || | | || |||| || |||||||| ||| || | | || || || | | Sbjct 16537 TGTCGATGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAATTTCTTAATGTTGT 16596 Query 75609 CTGGAAGATTTG-TA--TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCT 75665 |||||| ||| | || || ||||||||||| ||| || || |||||| || Sbjct 16597 CTGGAATATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGATGAAATTCTTCATTG 16656 Query 75666 CATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAA 75725 |||| ||||| | | | || | | | || || | | |||||| ||||| || | Sbjct 16657 CATCGTTCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGA 16716 Query 75726 ATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCAT 75785 | || |||| | ||||||| || || ||| ||| |||| || | | || | Sbjct 16717 ACTCACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGT 16776 Query 75786 TGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 75845 ||| |||| ||| |||| || || ||||| |||||||| || ||||| | ||||| Sbjct 16777 TGTAACCCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTC 16836 Query 75846 TGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTA 75905 | ||||||| | ||| || | || | | | ||||||||| ||||| | ||| Sbjct 16837 TAAGACCATCCTTAGCGATCTTGGCCTTCAAAGTCTCCCAATCCCACAGATCAGTTGGCT 16896 Query 75906 CAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTT 75965 || ||| | |||||| || ||||| || ||| ||| || || | || || | Sbjct 16897 TCTTATTCCACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCT 16956 Query 75966 CGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG---CCTCTAACGCACCGTAATAAA 76022 |||| || || || | ||| || | | | | |||| | ||||| | || | Sbjct 16957 CGTACGTACCCTCTTCCACAGAAAGCTG---ATTTGATTCCTCCAGAGCACCATGGTACA 17013 Query 76023 TTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTA 76082 || ||||| |||| | ||||| || | ||||| | | ||||| || ||| | Sbjct 17014 AGGTCTCGAATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGC-AATCTG 17072 Query 76083 A--AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140 | | ||| || | ||| || || || ||||| |||| | | |||||||| | |||| | Sbjct 17073 AGCATGAAGAAC-GTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCAT 17131 Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||||| | || ||||||| ||||| ||||| | || || | || | || Sbjct 17132 GTTGGAGTTGCGGGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTT 17191 Query 76201 TC---TGACAACT------ACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCC 76251 | ||||||| | || || | || | |||| || | | ||| Sbjct 17192 ACGTGTGACAACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAACCAAC--AGTGATCC 17249 Query 76252 ATCTATCACA-AACATATTAAG---AGCTATAGAT-GCTAGATTACAAACGGCTACCTCA 76306 | | || |||| || || ||| | | | || | ||||| || | |||||| Sbjct 17250 TTGTCGGACTCAACAAATGCAGGCAAGCAAATGTTTGCCAAGTTACACACACCGACCTCA 17309 Query 76307 TTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGA 76366 | | | | || | | | ||| ||| | ||| | ||||||| ||||| | Sbjct 17310 TCTGGAGAAGAGTACTCGACAACCTCACAGCACAAATTCGAAGACTTGATGGTTCCCAAG 17369 Query 76367 TTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTT 76426 || | ||| || |||||| |||| || | ||||| |||| | || || || || ||| Sbjct 17370 TTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTT 17429 Query 76427 TCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATTATAGATTTGT 76484 || |||| | || | ||| | ||| | ||| || ||| || | | || | Sbjct 17430 TCTGTCTGAGCCTCCAAAATCTGATACCACA--ACTTCTGAGCCTTAACGGTTC--TTCT 17485 Query 76485 ATCGCTTCTCTCTTTCA--TATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATC 76542 | | || ||| ||| || | || || ||| |||||| || || || ||||||| Sbjct 17486 TCCACGTCCCTCCTTCTCGTAACGAGTGTACAACTTTTCAAACTCGTCACCATAAACATC 17545 Query 76543 ATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCG 76602 | ||| || ||| ||| | | ||| | ||| | ||| || | ||| || Sbjct 17546 TGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCATTTTGTTCAACACG 17605 Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||| || |||||||| ||||| ||||| || | ||| || | | || || Sbjct 17606 CTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCACGGATCTCCTC 17665 Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722 || || |||||| | | ||| | ||| || | ||||| | |||||| ||||||| Sbjct 17666 CTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAA 17725 Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 || || || || |||| |||| || ||||| || || || | ||| || ||||| | Sbjct 17726 GTAGATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACATACCTAGCAGTACT 17785 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 || | || | | ||| |||||||| || || |||||||| || || |||| ||| || Sbjct 17786 GTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTA 17845 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 || | |||||| ||| |||| ||| || || || || ||| | || || || Sbjct 17846 TGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAAT 17905 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 | ||||| ||||||| ||||| ||||| || || ||| |||||| |||| || Sbjct 17906 CAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCATTGCAAC 17965 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 | || || ||||| || | | ||| || |||||||||||||| ||||| || Sbjct 17966 TAAGAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACAATGTTGGAGAGGC 18025 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CC 77081 || ||||| || | | || | | || || | || | |||| ||||| | Sbjct 18026 GTGTGTGAAGTATCTCTTCGACATCAAATCATACGACTCCAAAACTTTAGGAATATCATC 18085 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 | | |||||||| || || || | ||| | | ||||||||| | ||| || |||| Sbjct 18086 ACCG-TGAATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTCTCTGCAACCTTAC 18144 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGA 77199 |||||| |||||| ||||| || | || ||||| ||||| ||||| || ||| Sbjct 18145 CATTTATCCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAAGTAGTTATAGCTGA 18204 Query 77200 AAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATC 77259 || || | || || |||| |||| || | | ||||| | || | ||||| Sbjct 18205 AA--TCACGGTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGCTTCATGACAAT--- 18259 Query 77260 CATG-ACAGTGGT--AGAAATAATTGGAGATCGTATTC-CATTTTTAGGATTAACATAGT 77315 | || | | | | ||| || || || ||| | ||| |||| || ||| ||||| Sbjct 18260 CTTGTAAACTTCTTCAGAGATCATAGGGGAT-TTCTTCTGGGTTTTTGGGTTATAATAGT 18318 Query 77316 TAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATA 77375 | | | ||||| || || || ||| | || || || | |||||| | ||| || | Sbjct 18319 TGTAAAGATCTTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTGTGCAAATTAGAAA 18378 Query 77376 CGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGT-GGCTGCT 77434 ||| | ||| || || | | | ||||| || ||||| ||||| || | || || Sbjct 18379 TGGCAAGTCTGGCGGCCAAAGTAGCATAATCTGGATGAATGGTAGT-CATATATGCCGCA 18437 Query 77435 ATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCC 77475 |||| || | ||| | || || || ||||| ||||| || Sbjct 18438 GTTTCAGCAGTTAAGTTGTCCAACTCAATAGTGGTAACACC 18478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712925684376960