Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq290 174 2e-38 >seq290 Length=58723 Score = 174 bits (192), Expect = 2e-38 Identities = 590/902 (65%), Gaps = 19/902 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 ||||||||| || || || || ||| | |||| || || || || |||||||| Sbjct 52784 CATAACACCAGCCTTCTGGTAGTCAGAAACTC-TCTTCTCAAAGAAGTTAGTCTTACCAG 52842 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATG 23323 | || || || || |||||||| || |||||||| | || ||| || || | |||| Sbjct 52843 CCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATC 52902 Query 23324 ATAATTCCTTTAAAAGCCTATCTGCTACA-AATTCAATATATTGACACATCAAATCATAG 23382 || | | | | || || || ||| ||||||| ||| || ||||| ||| || Sbjct 52903 CCAAAGCAATAAGCAATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCATATCGAAG 52961 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTT-TCAATGGAAAC 23441 || ||||| | | ||||| | |||||| |||| ||| || ||||| || Sbjct 52962 TTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAA-AGTCTTCTCAATATTGAC 53020 Query 23442 AGCATCTTTAATTATTTG---AACAATAACTTCTTCACTAGGTGGATATTTTAAATACTT 23498 ||| || | || |||| || |||||| ||| ||||||||||| || |||| Sbjct 53021 AGCCTCGGTCATAATTTTCTTAATAATAAC--CTT-ACTAGGTGGATGCTTCAAATGAGA 53077 Query 23499 AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGA 23558 ||||| | ||||| |||||| |||||| || |||||||| | ||| | ||||| || Sbjct 53078 GAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGA 53137 Query 23559 AAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCC 23618 || || | ||| ||||| || |||| || || | ||| || || | ||||| || || Sbjct 53138 GAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCC 53197 Query 23619 GGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 || ||||||| |||||| | || |||||||| || | | | || | |||| Sbjct 53198 AGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATC 53257 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC 23738 || || |||||| | | ||| |||||| || | | ||| || | Sbjct 53258 ATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTATG 53317 Query 23739 AATTGCTTTTAAGAGAAAAGT--TTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 || || || || | | ||| | |||| || || || || || || |||| || Sbjct 53318 GATAGCATTGAACA-AGTAGTCGGACTCCTTC-TTGTCGGTGATGTACGTTTCAAGTAAA 53375 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 | || | ||||| || || || |||| |||||| || || ||||| ||| Sbjct 53376 AGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTCTT 53435 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | |||||||| | || | || ||| || || || |||| |||||||||| Sbjct 53436 GCTTCTGGTAATTGAACCTGCTTCATGAAATTTTGTGCCAAGTTCTCGTCAACAATACCA 53495 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAG--TTGATA 23974 ||| ||| ||||| || || | |||| |||||| | ||| || | | || || Sbjct 53496 TCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTCATC 53555 Query 23975 AT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033 | || ||||| ||| | | || || || | ||||| || ||| | ||||||||| Sbjct 53556 TTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAG 53615 Query 24034 GCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAAT 24093 ||| || |||||||||| |||| ||||||| | || || || || || || ||| Sbjct 53616 GCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAAT 53675 Query 24094 CT 24095 || Sbjct 53676 CT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521481624809200