Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq115 280 2e-70
seq96 158 1e-33
seq173 147 3e-30
>seq115
Length=359903
Score = 280 bits (310), Expect = 2e-70
Identities = 1220/1906 (64%), Gaps = 49/1906 (3%)
Strand=Plus/Minus
Query 52801 GTCCAATGTGAATTGAATGGGA---GCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857
||||| ||||| || |||| | |||| || || ||||| | |||||||| ||
Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGT---GTACGCAAGTAGTACATACC 6789
Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCG 52916
|| || ||||| ||||||| || || ||||| || | || ||| | |
Sbjct 6788 AGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGG 6729
Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976
| ||| | ||| |||||||| || || |||| |||| | || || ||||| ||||
Sbjct 6728 GGATTGCAA-ATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAG 6670
Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATA 53035
|||| | |||| | || |||| || ||||||| || ||| | | ||| |||
Sbjct 6669 CCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATT 6610
Query 53036 TCTTCTGGAAGGTTTG-TA--TTCTGAATAGATCCACCATCTACCATAATCCTA---TTC 53089
||| |||| | |||| || ||||| ||||| ||| ||| | |||| || | |
Sbjct 6609 TCT-CTGGCACATTTGGTAAGTTCTGGATAGAACCATTATC---CTTAATGATAAAGTCC 6554
Query 53090 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 53149
|| || ||| | |||| | | ||| | || | | | | || ||||||||
Sbjct 6553 TTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACA 6494
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
| || || || || | ||| ||||| | || || || || | || || | |
Sbjct 6493 ATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAA 6434
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
| || || | |||| ||| |||| || |||||||| ||||| ||||||| || ||
Sbjct 6433 CATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAAC 6374
Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329
||| || | || | | || || | | |||| ||||| | |||||||||
Sbjct 6373 GAATTCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAAGATCG 6314
Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389
| ||| ||| || ||||| ||| || ||||||| |
Sbjct 6313 GTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCG 6254
Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449
||||| || | ||||||| ||||||||| |||| | || |||||| | |
Sbjct 6253 TATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGG 6194
Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509
|| | || || ||||||| |||| | || | ||||| | || || || || ||
Sbjct 6193 TATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGG-TAG 6135
Query 53510 TTTAAGA--GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567
||| ||| ||| | ||||| | ||||| | ||| ||| | |||||||||| ||
Sbjct 6134 ACGAAGCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTC 6076
Query 53568 TCTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626
|| |||| || ||| | | | ||||||| ||||| || || | ||||||| | | ||
Sbjct 6075 TCATATTCGA-ATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTC 6017
Query 53627 AGGTTTC---TGACAA--TTACT---TTGACCACATCCTTCA--GTTTGAGAAAATCAAA 53676
| ||| | | |||| ||| | |||| || ||| ||| | || | |
Sbjct 6016 AAGTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGAT 5957
Query 53677 TTGTCCATCTATTACAAACA-TGTTCAATGCAATAGAT--GCCAGATTACAAACGGCTAC 53733
|| || |||| | ||| | || | | | | | || |||| |||||| || | ||
Sbjct 5956 TTCTC-ATCTGATTCAACGAATGCTGGAAGACAGATATTAGCCAAATTACAGACACCAAC 5898
Query 53734 CTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793
|| || | | |||| | | |||| ||| | || |||| || || ||
Sbjct 5897 TTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACC 5838
Query 53794 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACC 53853
| ||| | ||||||||||||| ||||||| ||||| || || | |||||||| |||||
Sbjct 5837 GAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACC 5778
Query 53854 AGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGAT-T 53912
||||||| | |||| || | |||| | ||| | | ||||| | || | |
Sbjct 5777 AGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGAC---AGTTCT 5721
Query 53913 TGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970
| || | | ||| |||| ||| || |||||| ||| ||||| || || | ||
Sbjct 5720 TCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGAC 5661
Query 53971 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030
|| | | |||||| |||| || | | ||| | ||| || | || | |||
Sbjct 5660 ATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCAC 5601
Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 54090
|| ||||| || ||||||||||||||||||||| || | ||| | || |||| ||
Sbjct 5600 ACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTC 5541
Query 54091 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 54150
|| || || ||| | | ||||| ||| | | ||||| | |||||| |||||
Sbjct 5540 TTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTC 5481
Query 54151 CAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 54210
||| || | || || | ||||| || ||||| || || ||||| | ||||| || ||
Sbjct 5480 CAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGT 5421
Query 54211 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGAT 54270
| || | || | | ||| ||||| |||||||| || | ||||||||| || | ||
Sbjct 5420 ACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAAT 5361
Query 54271 ATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGA 54330
|| ||| | |||||||| ||| || | ||| || || || || |||||||
Sbjct 5360 GTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGA 5301
Query 54331 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 54390
||||| ||||| | || || ||||| ||||| || || || ||||| |||||
Sbjct 5300 AATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGC 5241
Query 54391 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 54450
|| | ||||| |||||| || | | | ||| || ||||| || ||||| || ||
Sbjct 5240 AACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGA 5181
Query 54451 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC 54510
||| ||||| || | || ||| | || ||||| | ||| | | || |||||
Sbjct 5180 AGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAATATC 5121
Query 54511 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 54570
| ||| || || || || |||||||| | | ||||||||||| || ||| ||
Sbjct 5120 ACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGACTTT 5061
Query 54571 GTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--T 54628
||| ||| | ||||| || || |||||| ||||| ||||| ||||| ||||| |
Sbjct 5060 ACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAATTGTAGTT 5001
Query 54629 GAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTAT 54674
|||| |||| ||||| | || | ||||| | | ||||||||
Sbjct 5000 GAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957
>seq96
Length=143779
Score = 158 bits (174), Expect = 1e-33
Identities = 355/525 (68%), Gaps = 14/525 (3%)
Strand=Plus/Plus
Query 53783 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 53840
||||||||||| | ||| ||||| || | ||| | ||||| ||||| ||||| ||||
Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099
Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900
||| || ||||||||||| ||| ||| | |||| | |||||| | ||||
Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159
Query 53901 TTATTATAGATTTG--TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTC 53958
| || | |||| |||||||||||| | || || |||||| ||| | |||||
Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217
Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAACGACCACTCTC 54017
||| |||||||||| | ||| ||| || | |||| | | | | ||||
Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGT 92276
Query 54018 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 54077
| ||| || |||| ||||||||| | || |||||||| | || |||||||| |
Sbjct 92277 CATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCC 92336
Query 54078 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 54137
||| | ||| || || || ||||||| ||||||| | ||| |||| | ||| |
Sbjct 92337 TGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTG 92396
Query 54138 AATGCCACGGTTCCAAGTATATGGTC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 54195
| ||||| ||||| || ||||| | || | || |||| ||| ||||| || |||||
Sbjct 92397 AGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454
Query 54196 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 54255
| ||| || ||| | |||| || | |||||||| ||| ||| | |||| ||
Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514
Query 54256 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 54300
||| || || || |||||| |||| || | | |||||||||
Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559
>seq173
Length=13397
Score = 147 bits (162), Expect = 3e-30
Identities = 592/914 (65%), Gaps = 25/914 (3%)
Strand=Plus/Minus
Query 23820 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 23879
||| |||| | |||||| || || || || || ||| | || ||||| || ||
Sbjct 11498 TCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTTC 11440
Query 23880 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATT 23939
|| || ||| | || || || || ||||||||||| ||||||| | | || ||||
Sbjct 11439 GTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGACC 11380
Query 23940 CTTTTAAATCCCAATTCAGAA-ATCAATCTATCTGCGACA-AACTCCATATATGTTTTCA 23997
| | | |||| | ||| | |||||| || || ||| || || | ||| ||
Sbjct 11379 TTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGC-ACAGAAGTCAACGTATTCACACA 11322
Query 23998 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGT 24056
|||| || || ||||| || | | ||| || | || | | ||||| |||| |
Sbjct 11321 TCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT 11262
Query 24057 TCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTT--TCTTCACTCGGTGGATACA 24114
| ||| ||| || || || || || |||| || | |||| ||| || |||| |
Sbjct 11261 -CGATATCGACGGCCTCCGTCATGATTC-TCTTGATGATGGTCTT-ACTAGGAGGATGCT 11205
Query 24115 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 24174
|| ||| || | | || ||||| || |||||||||||| || || | || |
Sbjct 11204 TCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAA 11145
Query 24175 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 24234
||||| || || || || || ||||| | || | ||| || | ||| || || || |
Sbjct 11144 GCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAG 11085
Query 24235 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCAT 24294
|||| ||||| || ||||| | || || | || |||||||||| | ||| || | |
Sbjct 11084 CAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGT 11025
Query 24295 AACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 24351
| |||| ||| || ||||| | | ||||| ||||| | || | | |
Sbjct 11024 ACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTG 10965
Query 24352 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 24411
| || ||||| || ||||| || | |||| ||| || |||| | || || || |
Sbjct 10964 GAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCT 10905
Query 24412 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 24471
||| ||| ||| ||| | || || ||||| || |||| || || || |||||||
Sbjct 10904 CAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGA 10845
Query 24472 AACATCTAGCCTCGGTAATCTGTA-CTTCTATACAAAATCGTTCT--GCTAAATTTTCAT 24528
| ||| ||||| | | ||| | || || | || ||||| || || || ||||
Sbjct 10844 ATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCAT 10788
Query 24529 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 24588
|| | ||| || ||||| || || ||||| || ||| || ||| | ||||
Sbjct 10787 CGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT 10728
Query 24589 CTGGTG----TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 24644
||| | || | || ||||| || || ||| || || | ||| | ||||| |
Sbjct 10727 -TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCC 10669
Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704
|||||||| || ||||||||||| || ||||| | |||||| || | || ||||| ||
Sbjct 10668 GTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGG 10609
Query 24705 AAAATAACAAATCT 24718
|| || || |||||
Sbjct 10608 AACATCACGAATCT 10595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593720271547920
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