Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq115 280 2e-70 seq96 158 1e-33 seq173 147 3e-30 >seq115 Length=359903 Score = 280 bits (310), Expect = 2e-70 Identities = 1220/1906 (64%), Gaps = 49/1906 (3%) Strand=Plus/Minus Query 52801 GTCCAATGTGAATTGAATGGGA---GCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||||| ||||| || |||| | |||| || || ||||| | |||||||| || Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGT---GTACGCAAGTAGTACATACC 6789 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCG 52916 || || ||||| ||||||| || || ||||| || | || ||| | | Sbjct 6788 AGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGG 6729 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | ||| | ||| |||||||| || || |||| |||| | || || ||||| |||| Sbjct 6728 GGATTGCAA-ATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAG 6670 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATA 53035 |||| | |||| | || |||| || ||||||| || ||| | | ||| ||| Sbjct 6669 CCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATT 6610 Query 53036 TCTTCTGGAAGGTTTG-TA--TTCTGAATAGATCCACCATCTACCATAATCCTA---TTC 53089 ||| |||| | |||| || ||||| ||||| ||| ||| | |||| || | | Sbjct 6609 TCT-CTGGCACATTTGGTAAGTTCTGGATAGAACCATTATC---CTTAATGATAAAGTCC 6554 Query 53090 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 53149 || || ||| | |||| | | ||| | || | | | | || |||||||| Sbjct 6553 TTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACA 6494 Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 | || || || || | ||| ||||| | || || || || | || || | | Sbjct 6493 ATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAA 6434 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 | || || | |||| ||| |||| || |||||||| ||||| ||||||| || || Sbjct 6433 CATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAAC 6374 Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329 ||| || | || | | || || | | |||| ||||| | ||||||||| Sbjct 6373 GAATTCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAAGATCG 6314 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389 | ||| ||| || ||||| ||| || ||||||| | Sbjct 6313 GTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCG 6254 Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 ||||| || | ||||||| ||||||||| |||| | || |||||| | | Sbjct 6253 TATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGG 6194 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || | || || ||||||| |||| | || | ||||| | || || || || || Sbjct 6193 TATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGG-TAG 6135 Query 53510 TTTAAGA--GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 ||| ||| ||| | ||||| | ||||| | ||| ||| | |||||||||| || Sbjct 6134 ACGAAGCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTC 6076 Query 53568 TCTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 || |||| || ||| | | | ||||||| ||||| || || | ||||||| | | || Sbjct 6075 TCATATTCGA-ATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTC 6017 Query 53627 AGGTTTC---TGACAA--TTACT---TTGACCACATCCTTCA--GTTTGAGAAAATCAAA 53676 | ||| | | |||| ||| | |||| || ||| ||| | || | | Sbjct 6016 AAGTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGAT 5957 Query 53677 TTGTCCATCTATTACAAACA-TGTTCAATGCAATAGAT--GCCAGATTACAAACGGCTAC 53733 || || |||| | ||| | || | | | | | || |||| |||||| || | || Sbjct 5956 TTCTC-ATCTGATTCAACGAATGCTGGAAGACAGATATTAGCCAAATTACAGACACCAAC 5898 Query 53734 CTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793 || || | | |||| | | |||| ||| | || |||| || || || Sbjct 5897 TTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACC 5838 Query 53794 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACC 53853 | ||| | ||||||||||||| ||||||| ||||| || || | |||||||| ||||| Sbjct 5837 GAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACC 5778 Query 53854 AGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGAT-T 53912 ||||||| | |||| || | |||| | ||| | | ||||| | || | | Sbjct 5777 AGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGAC---AGTTCT 5721 Query 53913 TGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 | || | | ||| |||| ||| || |||||| ||| ||||| || || | || Sbjct 5720 TCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGAC 5661 Query 53971 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030 || | | |||||| |||| || | | ||| | ||| || | || | ||| Sbjct 5660 ATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCAC 5601 Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 54090 || ||||| || ||||||||||||||||||||| || | ||| | || |||| || Sbjct 5600 ACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTC 5541 Query 54091 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 54150 || || || ||| | | ||||| ||| | | ||||| | |||||| ||||| Sbjct 5540 TTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTC 5481 Query 54151 CAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 54210 ||| || | || || | ||||| || ||||| || || ||||| | ||||| || || Sbjct 5480 CAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGT 5421 Query 54211 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGAT 54270 | || | || | | ||| ||||| |||||||| || | ||||||||| || | || Sbjct 5420 ACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAAT 5361 Query 54271 ATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGA 54330 || ||| | |||||||| ||| || | ||| || || || || ||||||| Sbjct 5360 GTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGA 5301 Query 54331 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 54390 ||||| ||||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 5300 AATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGC 5241 Query 54391 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 54450 || | ||||| |||||| || | | | ||| || ||||| || ||||| || || Sbjct 5240 AACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGA 5181 Query 54451 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC 54510 ||| ||||| || | || ||| | || ||||| | ||| | | || ||||| Sbjct 5180 AGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAATATC 5121 Query 54511 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 54570 | ||| || || || || |||||||| | | ||||||||||| || ||| || Sbjct 5120 ACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGACTTT 5061 Query 54571 GTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--T 54628 ||| ||| | ||||| || || |||||| ||||| ||||| ||||| ||||| | Sbjct 5060 ACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAATTGTAGTT 5001 Query 54629 GAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTAT 54674 |||| |||| ||||| | || | ||||| | | |||||||| Sbjct 5000 GAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957 >seq96 Length=143779 Score = 158 bits (174), Expect = 1e-33 Identities = 355/525 (68%), Gaps = 14/525 (3%) Strand=Plus/Plus Query 53783 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 53840 ||||||||||| | ||| ||||| || | ||| | ||||| ||||| ||||| |||| Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 ||| || ||||||||||| ||| ||| | |||| | |||||| | |||| Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159 Query 53901 TTATTATAGATTTG--TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTC 53958 | || | |||| |||||||||||| | || || |||||| ||| | ||||| Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217 Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAACGACCACTCTC 54017 ||| |||||||||| | ||| ||| || | |||| | | | | |||| Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGT 92276 Query 54018 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 54077 | ||| || |||| ||||||||| | || |||||||| | || |||||||| | Sbjct 92277 CATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCC 92336 Query 54078 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 54137 ||| | ||| || || || ||||||| ||||||| | ||| |||| | ||| | Sbjct 92337 TGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTG 92396 Query 54138 AATGCCACGGTTCCAAGTATATGGTC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 54195 | ||||| ||||| || ||||| | || | || |||| ||| ||||| || ||||| Sbjct 92397 AGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454 Query 54196 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 54255 | ||| || ||| | |||| || | |||||||| ||| ||| | |||| || Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514 Query 54256 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 54300 ||| || || || |||||| |||| || | | ||||||||| Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559 >seq173 Length=13397 Score = 147 bits (162), Expect = 3e-30 Identities = 592/914 (65%), Gaps = 25/914 (3%) Strand=Plus/Minus Query 23820 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 23879 ||| |||| | |||||| || || || || || ||| | || ||||| || || Sbjct 11498 TCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTTC 11440 Query 23880 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATT 23939 || || ||| | || || || || ||||||||||| ||||||| | | || |||| Sbjct 11439 GTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGACC 11380 Query 23940 CTTTTAAATCCCAATTCAGAA-ATCAATCTATCTGCGACA-AACTCCATATATGTTTTCA 23997 | | | |||| | ||| | |||||| || || ||| || || | ||| || Sbjct 11379 TTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGC-ACAGAAGTCAACGTATTCACACA 11322 Query 23998 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGT 24056 |||| || || ||||| || | | ||| || | || | | ||||| |||| | Sbjct 11321 TCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT 11262 Query 24057 TCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTT--TCTTCACTCGGTGGATACA 24114 | ||| ||| || || || || || |||| || | |||| ||| || |||| | Sbjct 11261 -CGATATCGACGGCCTCCGTCATGATTC-TCTTGATGATGGTCTT-ACTAGGAGGATGCT 11205 Query 24115 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 24174 || ||| || | | || ||||| || |||||||||||| || || | || | Sbjct 11204 TCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAA 11145 Query 24175 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 24234 ||||| || || || || || ||||| | || | ||| || | ||| || || || | Sbjct 11144 GCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAG 11085 Query 24235 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCAT 24294 |||| ||||| || ||||| | || || | || |||||||||| | ||| || | | Sbjct 11084 CAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGT 11025 Query 24295 AACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 24351 | |||| ||| || ||||| | | ||||| ||||| | || | | | Sbjct 11024 ACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTG 10965 Query 24352 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 24411 | || ||||| || ||||| || | |||| ||| || |||| | || || || | Sbjct 10964 GAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCT 10905 Query 24412 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 24471 ||| ||| ||| ||| | || || ||||| || |||| || || || ||||||| Sbjct 10904 CAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGA 10845 Query 24472 AACATCTAGCCTCGGTAATCTGTA-CTTCTATACAAAATCGTTCT--GCTAAATTTTCAT 24528 | ||| ||||| | | ||| | || || | || ||||| || || || |||| Sbjct 10844 ATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCAT 10788 Query 24529 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 24588 || | ||| || ||||| || || ||||| || ||| || ||| | |||| Sbjct 10787 CGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT 10728 Query 24589 CTGGTG----TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 24644 ||| | || | || ||||| || || ||| || || | ||| | ||||| | Sbjct 10727 -TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCC 10669 Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704 |||||||| || ||||||||||| || ||||| | |||||| || | || ||||| || Sbjct 10668 GTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGG 10609 Query 24705 AAAATAACAAATCT 24718 || || || ||||| Sbjct 10608 AACATCACGAATCT 10595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720271547920