Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq173 161 1e-34
seq1 84.2 2e-11
>seq173
Length=13397
Score = 161 bits (178), Expect = 1e-34
Identities = 500/769 (65%), Gaps = 11/769 (1%)
Strand=Plus/Plus
Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665
|||||||| ||||| || || ||| || || |||| |||||||| ||||| |||||
Sbjct 10598 TTCGTGATGTTCCCTATTCAGTACGACGATATCTGGCAGATGTACAAGAAGGCAGAGGCC 10657
Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG---CGC 116722
|| || ||||| | ||| ||| | || || || ||||| |||||| | ||
Sbjct 10658 TCCTTTTGGACGGCCGAAGAGATCGATCTTTCGAAGGATCTCCCAGACTGGAACAACCGA 10717
Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782
|||||| ||||||| | | ||||| | || ||||||| ||||| || |||
Sbjct 10718 ATGAACGCCAACGAGAGATACTTCATATCGAGAGTCTTGGCCTTCTTCGCAGCATCCGAT 10777
Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842
|| | ||| | ||||| ||| | || ||| ||| |||| ||| || | |||||
Sbjct 10778 GGATTGGTCGATGAGAACTTGGCCCAGAACTTCATGCAGCAGGTTCAGCTGCCTGAGGCA 10837
Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902
| ||||||||||| |||||| | ||||| | ||||| || | ||| ||
Sbjct 10838 AGAGCATTCTACGGCTTCCAGATCATGGTTGAGAATATTCACTCCGAGACGTACTCTCTA 10897
Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAG 116962
| | || || ||||| | | | |||| | | ||||| || |||||||||
Sbjct 10898 TTGCTTGAGACCTACGTCACCGATAAGAAGGAATCGGACTACTTGTTCAATGCCATCGAG 10957
Query 116963 ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG 117022
|| || || |||| || ||||| |||||| | ||||| || ||
Sbjct 10958 ACCATTCCACCTATCAAGGAAAAGGCACTGTGGGCATACAGATGGATGAATAACA---AG 11014
Query 117023 GCCGCCTT---CGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCG 117079
| |||||| || |||| | |||| ||||| || ||| ||||||| || ||||| ||
Sbjct 11015 GACGCCTTGTACGCCGAGAGATTGGTTGCCTTTGCAGCCATCGAGGGTGTGTTCTTCTCC 11074
Query 117080 GGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
|| || || | || || ||| | ||||| | || | ||||| || || || |||
Sbjct 11075 GGATCGTTTGCTTCGATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGTCTTACATTC 11134
Query 117140 AGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199
|||||||| |||| |||||| |||||||| || ||||| ||||| | || |||
Sbjct 11135 TCGAACGAGCTTATCTGCAGGGATGAGGGTCTACACACGGACTTCGCCTGCCTCCTATTC 11194
Query 117200 AAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTC 117259
|| ||| ||| | || || | | | ||| | ||| | || || || |||
Sbjct 11195 TCACACTTGAAGCATCCTCCTAGTAAGACCATCATCAAGAGAATCATGACGGAGGCCGTC 11254
Query 117260 GCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTG 117318
| |||||| || | ||| | || || | || | | ||| || |||| | || ||
Sbjct 11255 GATATCGAGAAGAGTTTCTGGAGAGACGCATTACCTGTTTCGT-TGTTGGGTATGAACTG 11313
Query 117319 CGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367
||| | ||||| ||||| | || ||| |||||||| ||||| ||
Sbjct 11314 CGATATGATGTGTGAATACGTTGACTTCTGTGCCGACAGATTGCTGGTC 11362
>seq1
Length=504328
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||||| || || | ||||| || ||||| ||| | || ||||| | |
Sbjct 435301 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTC 435242
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | ||||| | || |||| || || ||||| ||||| | || ||
Sbjct 435241 TGACACCATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAGGGAATCCCACCTGATCA 435182
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || | || | ||| || || ||| |||| |||| | || || || |||||
Sbjct 435181 ACAGAGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGATTACAA 435122
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||| |||||| |||| || ||
Sbjct 435121 CATCCAAAAGGAGTCCACTCTTCA 435098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218047197040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |