Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq173 161 1e-34 seq1 84.2 2e-11 >seq173 Length=13397 Score = 161 bits (178), Expect = 1e-34 Identities = 500/769 (65%), Gaps = 11/769 (1%) Strand=Plus/Plus Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665 |||||||| ||||| || || ||| || || |||| |||||||| ||||| ||||| Sbjct 10598 TTCGTGATGTTCCCTATTCAGTACGACGATATCTGGCAGATGTACAAGAAGGCAGAGGCC 10657 Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG---CGC 116722 || || ||||| | ||| ||| | || || || ||||| |||||| | || Sbjct 10658 TCCTTTTGGACGGCCGAAGAGATCGATCTTTCGAAGGATCTCCCAGACTGGAACAACCGA 10717 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 |||||| ||||||| | | ||||| | || ||||||| ||||| || ||| Sbjct 10718 ATGAACGCCAACGAGAGATACTTCATATCGAGAGTCTTGGCCTTCTTCGCAGCATCCGAT 10777 Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842 || | ||| | ||||| ||| | || ||| ||| |||| ||| || | ||||| Sbjct 10778 GGATTGGTCGATGAGAACTTGGCCCAGAACTTCATGCAGCAGGTTCAGCTGCCTGAGGCA 10837 Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902 | ||||||||||| |||||| | ||||| | ||||| || | ||| || Sbjct 10838 AGAGCATTCTACGGCTTCCAGATCATGGTTGAGAATATTCACTCCGAGACGTACTCTCTA 10897 Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAG 116962 | | || || ||||| | | | |||| | | ||||| || ||||||||| Sbjct 10898 TTGCTTGAGACCTACGTCACCGATAAGAAGGAATCGGACTACTTGTTCAATGCCATCGAG 10957 Query 116963 ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG 117022 || || || |||| || ||||| |||||| | ||||| || || Sbjct 10958 ACCATTCCACCTATCAAGGAAAAGGCACTGTGGGCATACAGATGGATGAATAACA---AG 11014 Query 117023 GCCGCCTT---CGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCG 117079 | |||||| || |||| | |||| ||||| || ||| ||||||| || ||||| || Sbjct 11015 GACGCCTTGTACGCCGAGAGATTGGTTGCCTTTGCAGCCATCGAGGGTGTGTTCTTCTCC 11074 Query 117080 GGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 || || || | || || ||| | ||||| | || | ||||| || || || ||| Sbjct 11075 GGATCGTTTGCTTCGATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGTCTTACATTC 11134 Query 117140 AGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 |||||||| |||| |||||| |||||||| || ||||| ||||| | || ||| Sbjct 11135 TCGAACGAGCTTATCTGCAGGGATGAGGGTCTACACACGGACTTCGCCTGCCTCCTATTC 11194 Query 117200 AAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTC 117259 || ||| ||| | || || | | | ||| | ||| | || || || ||| Sbjct 11195 TCACACTTGAAGCATCCTCCTAGTAAGACCATCATCAAGAGAATCATGACGGAGGCCGTC 11254 Query 117260 GCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTG 117318 | |||||| || | ||| | || || | || | | ||| || |||| | || || Sbjct 11255 GATATCGAGAAGAGTTTCTGGAGAGACGCATTACCTGTTTCGT-TGTTGGGTATGAACTG 11313 Query 117319 CGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367 ||| | ||||| ||||| | || ||| |||||||| ||||| || Sbjct 11314 CGATATGATGTGTGAATACGTTGACTTCTGTGCCGACAGATTGCTGGTC 11362 >seq1 Length=504328 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || | ||||| || ||||| ||| | || ||||| | | Sbjct 435301 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTC 435242 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | ||||| | || |||| || || ||||| ||||| | || || Sbjct 435241 TGACACCATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAGGGAATCCCACCTGATCA 435182 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | ||| || || ||| |||| |||| | || || || ||||| Sbjct 435181 ACAGAGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGATTACAA 435122 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| |||| || || Sbjct 435121 CATCCAAAAGGAGTCCACTCTTCA 435098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218047197040