Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq110 102 1e-16 seq1 96.9 5e-15 >seq110 Length=92542 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || ||||| || ||||| || | ||| | || | Sbjct 53128 ATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACTATCACCTTGGAGGTCGAGTCTTCG 53069 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || ||||| ||||| || |||||||||||| Sbjct 53068 GACACGATCGACAATGTCAAGCAAAAGATCCAGGATAAGGAAGGAATTCCACCTGATCAA 53009 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || ||||| || || ||| | |||| | ||||| ||| Sbjct 53008 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACTCTTTCTGATTACAAT 52949 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 ||||| || ||||| || | || ||||| || | || ||||||||| Sbjct 52948 ATTCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGTA 52900 >seq1 Length=504328 Score = 96.9 bits (106), Expect = 5e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || ||||||||| || | ||||| | || || || || || || | || | || | Sbjct 435304 TAGAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTC 435245 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 ||| || ||| ||| | || ||||| ||||| ||||| || || || |||||||| Sbjct 435244 TTCTGACACCATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAGGGAATCCCACCTGA 435185 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 |||||| || | ||||| || || || || || || || || |||| | ||||| Sbjct 435184 TCAACAGAGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGATTA 435125 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || ||| | || |||||| | | || |||||||||||| Sbjct 435124 CAACATCCAAAAGGAGTCCACTCTTCACTTGGTTCTTAGATTGAGAGGTGGTATTA 435069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454309667200