Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq173 113 4e-20 >seq173 Length=13397 Score = 113 bits (124), Expect = 4e-20 Identities = 555/867 (64%), Gaps = 25/867 (3%) Strand=Plus/Minus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 || ||||| || ||||| || || |||||| | || ||||| || ||||| |||||||| Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401 Query 16019 GGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACA 16078 ||||| || | ||| || || ||||| | | || ||||| || || ||| Sbjct 11400 GGATTCTTGGCGTTGTAGACCTTCTCACATCCGAGAGAGACCAGCAATCTGTCGGC-ACA 11342 Query 16079 -AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGC 16137 || || | || | ||| | ||| |||||||| || | || |||||| | ||| Sbjct 11341 GAAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGC 11282 Query 16138 TTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACT-ACAC 16196 ||| | | ||| | || || |||| || || || | || || |||||| | | Sbjct 11281 GTCTCTCCAGAAACTCTTCTCGATATCGACGGCCTCCGTCATGAT-TCTCTTGATGATGG 11223 Query 16197 TATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATC 16256 | || ||||| | |||||| || | | || || || || || | | Sbjct 11222 TCTTACTAGGAGGATGCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGAC 11163 Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 | || ||||| | || | |||||| || ||||||||||||||||| | |||| || | Sbjct 11162 CCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCT 11103 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||| || || | ||||| || || || ||||| | ||| || | || ||||| | Sbjct 11102 TCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGG 11043 Query 16377 CAACCAATCGCTCACCGTA-----CGTTCTAtttttactttctatccattttttagccca 16431 ||||||||| ||| |||| ||| | || ||| ||| |||||| | | ||||| Sbjct 11042 CAACCAATCTCTCGGCGTACAAGGCGTCC--TTGTTA--TTC-ATCCATCTGTATGCCCA 10988 Query 16432 atttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttC 16491 ||| |||| || | | ||| |||| || ||||| || || || | ||| Sbjct 10987 CAGTGCCTTTTCCTTGATAGGTGGAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTC 10928 Query 16492 TTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTC 16551 || |||| | || || || | | || | ||| | || || ||||||||||| Sbjct 10927 CTTCTTATCGGTGACGTAGGTCTCAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTC 10868 Query 16552 CATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA-CTTCAGAGTAAA 16610 | ||||| || || || || ||| || || | | || | || | | | || Sbjct 10867 AACCATGATCTGGAAGCCGTAGAATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA 10808 Query 16611 ACCTTTCT--GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACG-CAAGTA 16667 |||| || ||||| || | || | ||||||| ||||| || || | |||| Sbjct 10807 ---GTTCTGGGCCAAGTTCTCATCGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGAC 10751 Query 16668 TGTGTTTAATAAAAtttttttCGTTATC--TGA-AAGTTTTAACCAGTCAGAAAAATCTT 16724 | | | || || | | | ||||| | | | | || |||||| | | ||| | Sbjct 10750 TCTCGAT-ATGAAGTATCTCTCGTTGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCT 10692 Query 16725 TTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCC 16784 | || | ||||| |||||| | |||||||| || || | ||||| || ||||| | || Sbjct 10691 TCGAAAGATCGATCTCTTCGGCCGTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCC 10632 Query 16785 ATATGTCTTCGTAAACAATAGGAAACA 16811 | || || ||||| |||||| |||| Sbjct 10631 AGATATCGTCGTACTGAATAGGGAACA 10605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510965129400