Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq173 113 4e-20
>seq173
Length=13397
Score = 113 bits (124), Expect = 4e-20
Identities = 555/867 (64%), Gaps = 25/867 (3%)
Strand=Plus/Minus
Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018
|| ||||| || ||||| || || |||||| | || ||||| || ||||| ||||||||
Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401
Query 16019 GGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACA 16078
||||| || | ||| || || ||||| | | || ||||| || || |||
Sbjct 11400 GGATTCTTGGCGTTGTAGACCTTCTCACATCCGAGAGAGACCAGCAATCTGTCGGC-ACA 11342
Query 16079 -AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGC 16137
|| || | || | ||| | ||| |||||||| || | || |||||| | |||
Sbjct 11341 GAAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGC 11282
Query 16138 TTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACT-ACAC 16196
||| | | ||| | || || |||| || || || | || || |||||| | |
Sbjct 11281 GTCTCTCCAGAAACTCTTCTCGATATCGACGGCCTCCGTCATGAT-TCTCTTGATGATGG 11223
Query 16197 TATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATC 16256
| || ||||| | |||||| || | | || || || || || | |
Sbjct 11222 TCTTACTAGGAGGATGCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGAC 11163
Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316
| || ||||| | || | |||||| || ||||||||||||||||| | |||| || |
Sbjct 11162 CCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCT 11103
Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376
| | ||| || || | ||||| || || || ||||| | ||| || | || ||||| |
Sbjct 11102 TCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGG 11043
Query 16377 CAACCAATCGCTCACCGTA-----CGTTCTAtttttactttctatccattttttagccca 16431
||||||||| ||| |||| ||| | || ||| ||| |||||| | | |||||
Sbjct 11042 CAACCAATCTCTCGGCGTACAAGGCGTCC--TTGTTA--TTC-ATCCATCTGTATGCCCA 10988
Query 16432 atttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttC 16491
||| |||| || | | ||| |||| || ||||| || || || | |||
Sbjct 10987 CAGTGCCTTTTCCTTGATAGGTGGAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTC 10928
Query 16492 TTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTC 16551
|| |||| | || || || | | || | ||| | || || |||||||||||
Sbjct 10927 CTTCTTATCGGTGACGTAGGTCTCAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTC 10868
Query 16552 CATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA-CTTCAGAGTAAA 16610
| ||||| || || || || ||| || || | | || | || | | | ||
Sbjct 10867 AACCATGATCTGGAAGCCGTAGAATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA 10808
Query 16611 ACCTTTCT--GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACG-CAAGTA 16667
|||| || ||||| || | || | ||||||| ||||| || || | ||||
Sbjct 10807 ---GTTCTGGGCCAAGTTCTCATCGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGAC 10751
Query 16668 TGTGTTTAATAAAAtttttttCGTTATC--TGA-AAGTTTTAACCAGTCAGAAAAATCTT 16724
| | | || || | | | ||||| | | | | || |||||| | | ||| |
Sbjct 10750 TCTCGAT-ATGAAGTATCTCTCGTTGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCT 10692
Query 16725 TTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCC 16784
| || | ||||| |||||| | |||||||| || || | ||||| || ||||| | ||
Sbjct 10691 TCGAAAGATCGATCTCTTCGGCCGTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCC 10632
Query 16785 ATATGTCTTCGTAAACAATAGGAAACA 16811
| || || ||||| |||||| ||||
Sbjct 10631 AGATATCGTCGTACTGAATAGGGAACA 10605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462510965129400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |