Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 122 7e-23 seq110 105 5e-18 >seq1 Length=504328 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||||| || ||| |||||| || |||||||| || Sbjct 435074 CCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAA 435133 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||| || || || ||||| ||||| | |||||| || || || Sbjct 435134 AGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGTGGG 435193 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| ||| ||| || ||||| || | | | |||| | ||| || Sbjct 435194 ATTCCCTCCTTATCCTGAATCTTCTGCTTGACATTGTCAATGGTGTCAGAAGACTCGACT 435253 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||||| ||||| ||||||| ||||| || || |||||||| Sbjct 435254 TCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCAT 435300 >seq110 Length=92542 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||| || || ||||||||||| ||||| || Sbjct 52902 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAGAA 52961 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || |||| ||||| || || || ||||| | |||||| || || || Sbjct 52962 AGAGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 53021 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || |||||||| || | | ||||| | ||| ||| Sbjct 53022 ATTCCTTCCTTATCCTGGATCTTTTGCTTGACATTGTCGATCGTGTCCGAAGACTCGACC 53081 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || ||||| || || || ||||| || || |||||||| ||| Sbjct 53082 TCCAAGGTGATAGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTTG 53132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074338118759