Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq173 116 4e-21 >seq173 Length=13397 Score = 116 bits (128), Expect = 4e-21 Identities = 284/428 (66%), Gaps = 2/428 (0%) Strand=Plus/Minus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 || || || || |||||||| || || ||| ||| || || || ||||| ||||||||| Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401 Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047 ||||| | | | | || || ||||| || || | || ||||| || ||| | Sbjct 11400 GGATTCTTGGCGTTGTAGACCTTCTCACATCCGAGAGAGACCAGCAATCTGTCGGCACAG 11341 Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107 || |||| |||| | |||| | ||| || |||||||| | | ||||| | | Sbjct 11340 AAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCG 11281 Query 14108 TTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTC 14166 | | | ||| |||| | | ||| || ||||| | || || || | || || Sbjct 11280 TCTCTCCAGAAACTCTTCT-CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGT 11222 Query 14167 ATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCC 14226 ||| |||||||| || | ||| || | | || || || || || || || Sbjct 11221 CTTACTAGGAGGATGCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACC 11162 Query 14227 CTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttt 14286 |||||| || | ||||| ||||| || ||||| | ||||||||||| |||| || || Sbjct 11161 CTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTT 11102 Query 14287 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 ||||| || || | ||| || |||||||| ||||| | ||||| | || ||||| || Sbjct 11101 CAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGC 11042 Query 14347 TATTAATC 14354 | |||| Sbjct 11041 AACCAATC 11034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344520751720