Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 seq110 96.9 3e-15 >seq1 Length=504328 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 |||||| |||| |||||| || || || ||||| |||||||| || | | ||| ||| Sbjct 435085 TCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 435144 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||||| || || || || | || | ||| |||||||| || | || ||||| Sbjct 435145 GTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGTGGGATTCCCTCCTT 435204 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 ||| ||| | |||||||| | ||| |||||| | |||| ||| | ||| || Sbjct 435205 ATCCTGAATCTTCTGCTTGACATTGTCAATGGTGTCAGAAGACTCGACTTCCAAGGTAAT 435264 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | | || || ||||| || || || |||||||||||| Sbjct 435265 GGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATT 435301 >seq110 Length=92542 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/243 (69%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAAT 18145 ||||| || ||| || || | | ||| | |||| |||||| || ||||| || ||||| Sbjct 52890 TTCTTCTTCTTA-CCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAAT 52948 Query 18146 GTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTG 18205 ||||| || | | ||| | | ||||||||| ||||| || ||| |||| | ||| || Sbjct 52949 ATTGTAATCAGAAAGAGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTG 53008 Query 18206 TTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTC 18265 |||||| || | ||||||||||| || | ||||||||| | | | ||||| Sbjct 53009 TTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTTTGCTTGACATTGTCGATCGTGTC 53068 Query 18266 ACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||| || | |||||| | || || || | || || || ||||||||||| Sbjct 53069 CGAAGACTCGACCTCCAAGGTGATAGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCAT 53128 Query 18326 TTT 18328 || Sbjct 53129 CTT 53131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343172437355