Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq115 260 1e-64 seq173 176 4e-39 seq1 120 3e-22 seq110 113 4e-20 >seq115 Length=359903 Score = 260 bits (288), Expect = 1e-64 Identities = 1351/2143 (63%), Gaps = 50/2143 (2%) Strand=Plus/Minus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 |||||| || ||||| ||||| |||||| | | || || | || ||||| || || Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGT 6786 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 ||| |||||| ||||||| | || || || || || ||||| || || | | || | Sbjct 6785 CTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGA 6726 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 | || | | ||| | ||||| ||| ||| | || |||| ||||| ||||| Sbjct 6725 TTGCAAATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCAT 6666 Query 22288 ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA---TCTC 22344 || || | | | || || ||||| ||||| |||| || | ||| |||| Sbjct 6665 ATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTCTC 6606 Query 22345 TAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || | | || | | |||||| || || |||| | ||||| || | || | Sbjct 6605 T---GGCA-CATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCA 6550 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | || |||| | ||| || || | || || || | || || | | || || | | Sbjct 6549 TTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCT 6490 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | ||||| |||| ||| || | | ||| || |||||||||||||| || |||||| ||| Sbjct 6489 GGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATT 6430 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | |||| |||| ||||||| || || || || ||||| || ||||| | | ||| | Sbjct 6429 CGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAAT 6370 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG--CATCGACCAGTCCCACAGATCGGA 22641 | ||||| || | ||| | | || | ||| | |||| ||||||||| ||||||| Sbjct 6369 TCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATC--CCAGTCCCAAAGATCGGT 6312 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 || || ||| ||||||||| ||||| | | || | || || ||||| Sbjct 6311 TGGTTTCTTATT---CCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTC 6255 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 ||| ||| || | ||| | || || |||| || | ||||| || | | Sbjct 6254 GTATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATG 6195 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 |||| |||||| ||||| | | |||||||| || | || ||| |||| | Sbjct 6194 GTATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGGTAG 6135 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881 ||| | ||| | ||| | || || | ||| || | || ||| | || |||| ||| | Sbjct 6134 ACGAAGCATGAAGAAAGTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCT 6075 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || |||||| ||||| || | ||||| | ||| || || ||||||||| Sbjct 6074 CATATTCGAATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAA 6015 Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001 ||| | || |||| || || || ||||||| | | ||||| Sbjct 6014 GTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTT 5955 Query 23002 ---------TACAACAAA--CTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACC 23050 | |||| || || | ||| | || || ||| ||| || || | || Sbjct 5954 CTCATCTGATTCAACGAATGCTGGAAGACAGATATT-AGCCAA-ATTACAGACACCAACT 5897 Query 23051 TCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCC 23110 || | | || | ||| || |||| || |||| ||| |||| || || || Sbjct 5896 TCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCG 5837 Query 23111 AAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCC 23170 | ||| | || || || |||| || || | ||| ||||||| |||| | || || || Sbjct 5836 AGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCA 5777 Query 23171 GTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG---- 23226 || || || | ||| | ||| ||| | | || || | ||| || Sbjct 5776 GTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACAGTTCTTCTA 5717 Query 23227 -CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-A 23284 |||| |||| |||| | | || || |||||| || || || ||||||| | Sbjct 5716 CCACG-ACCTTCCTTTT----CATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGA 5662 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 || |||| ||||| || | || || | | | | |||| || ||||||| Sbjct 5661 CA-TCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCA---TGGACCATTTTCT 5606 Query 23345 ---ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || |||| |||||||| || ||||| ||||| ||||| || ||||| | Sbjct 5605 TCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTA 5546 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 | ||| || || || |||| | | ||| | || || || | || |||||||| Sbjct 5545 ATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAA 5486 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 || || | || ||||||| || || || | ||| || || || |||||||| || | | Sbjct 5485 GGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTG 5426 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 || || ||||| | || | | ||| || | || ||| || || | || || Sbjct 5425 GCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCT 5366 Query 23582 GCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641 || | || || | || |||| ||| || | || | ||| || || ||| | | | Sbjct 5365 GCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTT 5306 Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701 || || || | ||||| || |||| ||| |||||||| || |||||| ||| ||||| Sbjct 5305 TTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTC 5246 Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761 | || ||||||||||| |||||||| || | | | || ||| | || ||||| || Sbjct 5245 ATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTT 5186 Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821 || || ||||| ||||| | || ||||| || ||||| | || | | | | Sbjct 5185 GGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGA 5126 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC- 23880 || || || || ||||| | ||| || ||||||| | | |||||||||||| | Sbjct 5125 ATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCG 5066 Query 23881 -CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGT 23939 | | | ||||| ||| | | || |||||| |||| || |||||| || || ||||| | Sbjct 5065 ACTTTA--CCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAAT 5008 Query 23940 CATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGA 23999 ||||| || || | ||||| ||||| || ||||| | | || || || Sbjct 5007 TGTAGTTGAAATCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTATGAGCCATGA 4948 Query 24000 TGATGTTGTAATGAAAATTCGATATCATCGGCGTTTTAACGCCGGTCTTTGGATCGATCG 24059 || | || || || ||||| || ||| |||||| |||| | Sbjct 4947 CAATATCATAGGTCTCCTTAGAAATCATAGGACATTTCTTCTTGGTCTTAGGATTGTAGT 4888 Query 24060 CTTCATACATATCGATAATGACATCGAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAG 24119 ||||| | ||| ||||||||| |||| | ||| |||| ||||||||| || | Sbjct 4887 AATCATAAAGATCCTGGATGACATCGGAAAAGTGCTTTTTGGTCTGCTTGTGCAAGTTCG 4828 Query 24120 ACACGGCCAATCTAGCCGCAAGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTG 24179 | | ||||| | || || | | |||||| | ||| | |||||| |||| Sbjct 4827 AGATTGCCAAACGTGCAGCCAATGTAGCATAGTCAGGATGCAGAGTAGTCATGTAAGCTG 4768 Query 24180 CCGTCTCGGCGATTAGATTGTCCAATTCAGCGGTGGTCACGCC 24222 | |||||||| ||| || ||||| ||| |||||||||| || Sbjct 4767 CAGTCTCGGCAGTTAAGTTATCCAACTCAACGGTGGTCACACC 4725 >seq173 Length=13397 Score = 176 bits (194), Expect = 4e-39 Identities = 612/935 (65%), Gaps = 25/935 (3%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || ||||| || ||| ||||||| | ||||| || ||||| || ||| | || Sbjct 10565 GAGGAACCTCTATTGAAAGAGAACAAGCACAGATTCGTGATGTTCCCTATTCAGTACGAC 10624 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | |||||||| |||||||| || || |||||||| | |||||| | || Sbjct 10625 GATATCTGGCAGATGTACAAGAAGGCAGAGGCCTCCTTTTGGACGGCCGAAGAGATCGAT 10684 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTAT- 57682 || || |||||||| || ||| | || | || | |||||| | || || Sbjct 10685 CTTTCGAAGGATCTCCCAGACTGGAACAACCGAATGAACGCCAACGAGAGATACTTCATA 10744 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 | | | || ||||| || ||||| ||||||||||| | || | ||||| |||| | Sbjct 10745 TCGAGA-GTCTTGGCCTTCTTCGCAGCATCCGATGGATTGGTCGATGAGAACTTGGCC-- 10801 Query 57743 AAGATTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800 ||| |||| || | || || || | ||||| ||| || ||||| || || | Sbjct 10802 CAGAACTTCATGCAGCAGGTTCAGCTGCCTGAGGCAAGAGCATTCTACGGCTTCCAGATC 10861 Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860 |||| || | || || || | ||| || ||| | | || || ||||| | || Sbjct 10862 ATGGTTGAGAATATTCACTCCGAGACGTACTCTCTATTGCTTGAGACCTACGTCACCGAT 10921 Query 57861 AACGACGAGAAACGTA-GAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 || || | ||| || | || ||||||| || ||||| || || || | ||| | | Sbjct 10922 AA-GAAG-GAATCGGACTACTTGTTCAATGCCATCGAGACCATTCCACCTATCAAGGAAA 10979 Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 ||||| |||| || || |||||| || | | ||| || ||||||||| | Sbjct 10980 AGGCACTGTGGGCATACAGATGGATGAATAACAAGGACGCCTTGTACGCCGAGAGATTGG 11039 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || || || ||| |||| ||| | ||||| || || ||||| | || || ||| Sbjct 11040 TTGCCTTTGCAGCCATCGAGGGTGTGTTCTTCTCCGGATCGTTTGCTTCGATCTTCTGGT 11099 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| | || ||||||| || || || || |||||| | || | | || | Sbjct 11100 TGAAGAAGAGAGGTTTGATGCCAGGTCTTACATTCTCGAACGAGCTTATCTGCAGGGATG 11159 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC-- 58156 ||||||| || || || || || ||||| || ||||||| | | || | || | Sbjct 11160 AGGGTCTACACACGGACTTCGCCTGCCT--CCTATTCTCACACT-TGAAGCATCCTCCTA 11216 Query 58157 GCGGGATC-GCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT-C 58214 | || | |||| | || || || ||||| |||| ||||| || |||||| | Sbjct 11217 GTAAGACCATCATCAAGAGAATCATGACGGAGGCCGTCGATATCGAGAA-GAGTTTCTGG 11275 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 | || || |||| || | || | ||||||||| ||| |||||| | ||| || Sbjct 11276 AGAGACGCATTACCTGTTTCGTTGTTGGGTATGAACTGCGATATGATGTGTGAATACGTT 11335 Query 58275 GAGTTTGTTGCCGACAGACTTTTG--CTCGAACTGATTGGAGAGCGTCATTACAACACGA 58332 || || |||||||||| | || ||| | ||| |||| ||| |||||| | | Sbjct 11336 GACTTCTGTGCCGACAGATTGCTGGTCTCTCTCGGATGTGAGAAGGTC--TACAACGCCA 11393 Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 | ||||| |||||||| ||| | || ||| | | || ||||| ||||| ||||| | Sbjct 11394 AGAATCCATTTGATTTCATGGAGAACATTTCGTTGGCAGGAAAGACGAACTTCTTCGAGA 11453 Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 | | || ||| ||||| || ||| || ||| Sbjct 11454 AGAGGGTGTCCGATTATCAGAAGGCCGGTGTTATG 11488 >seq1 Length=504328 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || || ||| | || || || | || Sbjct 435300 ATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTCT 435241 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| |||| || ||| ||||| || | || || || || Sbjct 435240 GACACCATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAGGGAATCCCACCTGATCAA 435181 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| || |||||||||||| || ||| | ||||| ||| Sbjct 435180 CAGAGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGATTACAAC 435121 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || |||||||| |||| |||||| |||| || |||| Sbjct 435120 ATCCAAAAGGAGTCCACTCTTCACTTGGTTCTTAGATTGAGAGGTGGTA 435072 >seq110 Length=92542 Score = 113 bits (124), Expect = 4e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| ||||| || ||||| || || |||||| | || || || | Sbjct 53131 AAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACTATCACCTTGGAGGTCGAGTCT 53072 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| || | || ||| |||||||| | || || || Sbjct 53071 TCGGACACGATCGACAATGTCAAGCAAAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 53012 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | | || || ||||| |||||||||||||| | ||| | ||||| Sbjct 53011 CAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACTCTTTCTGATTAC 52952 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AGAAG 31425 || ||||| || ||||| || ||||| |||| | ||| |||| || ||| ||||| Sbjct 52951 AATATTCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGTAAGAAG 52895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765402597680