Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq115 260 1e-64
seq173 176 4e-39
seq1 120 3e-22
seq110 113 4e-20
>seq115
Length=359903
Score = 260 bits (288), Expect = 1e-64
Identities = 1351/2143 (63%), Gaps = 50/2143 (2%)
Strand=Plus/Minus
Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167
|||||| || ||||| ||||| |||||| | | || || | || ||||| || ||
Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGT 6786
Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227
||| |||||| ||||||| | || || || || || ||||| || || | | || |
Sbjct 6785 CTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGA 6726
Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287
| || | | ||| | ||||| ||| ||| | || |||| ||||| |||||
Sbjct 6725 TTGCAAATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCAT 6666
Query 22288 ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA---TCTC 22344
|| || | | | || || ||||| ||||| |||| || | ||| ||||
Sbjct 6665 ATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTCTC 6606
Query 22345 TAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
| || | | || | | |||||| || || |||| | ||||| || | || |
Sbjct 6605 T---GGCA-CATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCA 6550
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463
| | || |||| | ||| || || | || || || | || || | | || || | |
Sbjct 6549 TTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCT 6490
Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523
| ||||| |||| ||| || | | ||| || |||||||||||||| || |||||| |||
Sbjct 6489 GGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATT 6430
Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583
| |||| |||| ||||||| || || || || ||||| || ||||| | | ||| |
Sbjct 6429 CGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAAT 6370
Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG--CATCGACCAGTCCCACAGATCGGA 22641
| ||||| || | ||| | | || | ||| | |||| ||||||||| |||||||
Sbjct 6369 TCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATC--CCAGTCCCAAAGATCGGT 6312
Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701
|| || ||| ||||||||| ||||| | | || | || || |||||
Sbjct 6311 TGGTTTCTTATT---CCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTC 6255
Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761
||| ||| || | ||| | || || |||| || | ||||| || | |
Sbjct 6254 GTATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATG 6195
Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821
|||| |||||| ||||| | | |||||||| || | || ||| |||| |
Sbjct 6194 GTATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGGTAG 6135
Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881
||| | ||| | ||| | || || | ||| || | || ||| | || |||| ||| |
Sbjct 6134 ACGAAGCATGAAGAAAGTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCT 6075
Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941
|| |||||| ||||| || | ||||| | ||| || || |||||||||
Sbjct 6074 CATATTCGAATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAA 6015
Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001
||| | || |||| || || || ||||||| | | |||||
Sbjct 6014 GTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTT 5955
Query 23002 ---------TACAACAAA--CTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACC 23050
| |||| || || | ||| | || || ||| ||| || || | ||
Sbjct 5954 CTCATCTGATTCAACGAATGCTGGAAGACAGATATT-AGCCAA-ATTACAGACACCAACT 5897
Query 23051 TCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCC 23110
|| | | || | ||| || |||| || |||| ||| |||| || || ||
Sbjct 5896 TCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCG 5837
Query 23111 AAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCC 23170
| ||| | || || || |||| || || | ||| ||||||| |||| | || || ||
Sbjct 5836 AGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCA 5777
Query 23171 GTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG---- 23226
|| || || | ||| | ||| ||| | | || || | ||| ||
Sbjct 5776 GTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACAGTTCTTCTA 5717
Query 23227 -CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-A 23284
|||| |||| |||| | | || || |||||| || || || ||||||| |
Sbjct 5716 CCACG-ACCTTCCTTTT----CATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGA 5662
Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344
|| |||| ||||| || | || || | | | | |||| || |||||||
Sbjct 5661 CA-TCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCA---TGGACCATTTTCT 5606
Query 23345 ---ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401
|| || |||| |||||||| || ||||| ||||| ||||| || ||||| |
Sbjct 5605 TCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTA 5546
Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461
| ||| || || || |||| | | ||| | || || || | || ||||||||
Sbjct 5545 ATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAA 5486
Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521
|| || | || ||||||| || || || | ||| || || || |||||||| || | |
Sbjct 5485 GGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTG 5426
Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581
|| || ||||| | || | | ||| || | || ||| || || | || ||
Sbjct 5425 GCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCT 5366
Query 23582 GCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641
|| | || || | || |||| ||| || | || | ||| || || ||| | | |
Sbjct 5365 GCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTT 5306
Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701
|| || || | ||||| || |||| ||| |||||||| || |||||| ||| |||||
Sbjct 5305 TTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTC 5246
Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761
| || ||||||||||| |||||||| || | | | || ||| | || ||||| ||
Sbjct 5245 ATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTT 5186
Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821
|| || ||||| ||||| | || ||||| || ||||| | || | | | |
Sbjct 5185 GGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGA 5126
Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC- 23880
|| || || || ||||| | ||| || ||||||| | | |||||||||||| |
Sbjct 5125 ATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCG 5066
Query 23881 -CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGT 23939
| | | ||||| ||| | | || |||||| |||| || |||||| || || ||||| |
Sbjct 5065 ACTTTA--CCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAAT 5008
Query 23940 CATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGA 23999
||||| || || | ||||| ||||| || ||||| | | || || ||
Sbjct 5007 TGTAGTTGAAATCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTATGAGCCATGA 4948
Query 24000 TGATGTTGTAATGAAAATTCGATATCATCGGCGTTTTAACGCCGGTCTTTGGATCGATCG 24059
|| | || || || ||||| || ||| |||||| |||| |
Sbjct 4947 CAATATCATAGGTCTCCTTAGAAATCATAGGACATTTCTTCTTGGTCTTAGGATTGTAGT 4888
Query 24060 CTTCATACATATCGATAATGACATCGAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAG 24119
||||| | ||| ||||||||| |||| | ||| |||| ||||||||| || |
Sbjct 4887 AATCATAAAGATCCTGGATGACATCGGAAAAGTGCTTTTTGGTCTGCTTGTGCAAGTTCG 4828
Query 24120 ACACGGCCAATCTAGCCGCAAGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTG 24179
| | ||||| | || || | | |||||| | ||| | |||||| ||||
Sbjct 4827 AGATTGCCAAACGTGCAGCCAATGTAGCATAGTCAGGATGCAGAGTAGTCATGTAAGCTG 4768
Query 24180 CCGTCTCGGCGATTAGATTGTCCAATTCAGCGGTGGTCACGCC 24222
| |||||||| ||| || ||||| ||| |||||||||| ||
Sbjct 4767 CAGTCTCGGCAGTTAAGTTATCCAACTCAACGGTGGTCACACC 4725
>seq173
Length=13397
Score = 176 bits (194), Expect = 4e-39
Identities = 612/935 (65%), Gaps = 25/935 (3%)
Strand=Plus/Plus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
|| ||||| || ||| ||||||| | ||||| || ||||| || ||| | ||
Sbjct 10565 GAGGAACCTCTATTGAAAGAGAACAAGCACAGATTCGTGATGTTCCCTATTCAGTACGAC 10624
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626
|| || ||| | |||||||| |||||||| || || |||||||| | |||||| | ||
Sbjct 10625 GATATCTGGCAGATGTACAAGAAGGCAGAGGCCTCCTTTTGGACGGCCGAAGAGATCGAT 10684
Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTAT- 57682
|| || |||||||| || ||| | || | || | |||||| | || ||
Sbjct 10685 CTTTCGAAGGATCTCCCAGACTGGAACAACCGAATGAACGCCAACGAGAGATACTTCATA 10744
Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742
| | | || ||||| || ||||| ||||||||||| | || | ||||| |||| |
Sbjct 10745 TCGAGA-GTCTTGGCCTTCTTCGCAGCATCCGATGGATTGGTCGATGAGAACTTGGCC-- 10801
Query 57743 AAGATTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800
||| |||| || | || || || | ||||| ||| || ||||| || || |
Sbjct 10802 CAGAACTTCATGCAGCAGGTTCAGCTGCCTGAGGCAAGAGCATTCTACGGCTTCCAGATC 10861
Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860
|||| || | || || || | ||| || ||| | | || || ||||| | ||
Sbjct 10862 ATGGTTGAGAATATTCACTCCGAGACGTACTCTCTATTGCTTGAGACCTACGTCACCGAT 10921
Query 57861 AACGACGAGAAACGTA-GAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918
|| || | ||| || | || ||||||| || ||||| || || || | ||| | |
Sbjct 10922 AA-GAAG-GAATCGGACTACTTGTTCAATGCCATCGAGACCATTCCACCTATCAAGGAAA 10979
Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978
||||| |||| || || |||||| || | | ||| || ||||||||| |
Sbjct 10980 AGGCACTGTGGGCATACAGATGGATGAATAACAAGGACGCCTTGTACGCCGAGAGATTGG 11039
Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038
| || || || ||| |||| ||| | ||||| || || ||||| | || || |||
Sbjct 11040 TTGCCTTTGCAGCCATCGAGGGTGTGTTCTTCTCCGGATCGTTTGCTTCGATCTTCTGGT 11099
Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098
||||||| | || ||||||| || || || || |||||| | || | | || |
Sbjct 11100 TGAAGAAGAGAGGTTTGATGCCAGGTCTTACATTCTCGAACGAGCTTATCTGCAGGGATG 11159
Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC-- 58156
||||||| || || || || || ||||| || ||||||| | | || | || |
Sbjct 11160 AGGGTCTACACACGGACTTCGCCTGCCT--CCTATTCTCACACT-TGAAGCATCCTCCTA 11216
Query 58157 GCGGGATC-GCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT-C 58214
| || | |||| | || || || ||||| |||| ||||| || |||||| |
Sbjct 11217 GTAAGACCATCATCAAGAGAATCATGACGGAGGCCGTCGATATCGAGAA-GAGTTTCTGG 11275
Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274
| || || |||| || | || | ||||||||| ||| |||||| | ||| ||
Sbjct 11276 AGAGACGCATTACCTGTTTCGTTGTTGGGTATGAACTGCGATATGATGTGTGAATACGTT 11335
Query 58275 GAGTTTGTTGCCGACAGACTTTTG--CTCGAACTGATTGGAGAGCGTCATTACAACACGA 58332
|| || |||||||||| | || ||| | ||| |||| ||| |||||| | |
Sbjct 11336 GACTTCTGTGCCGACAGATTGCTGGTCTCTCTCGGATGTGAGAAGGTC--TACAACGCCA 11393
Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392
| ||||| |||||||| ||| | || ||| | | || ||||| ||||| ||||| |
Sbjct 11394 AGAATCCATTTGATTTCATGGAGAACATTTCGTTGGCAGGAAAGACGAACTTCTTCGAGA 11453
Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427
| | || ||| ||||| || ||| || |||
Sbjct 11454 AGAGGGTGTCCGATTATCAGAAGGCCGGTGTTATG 11488
>seq1
Length=504328
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| |||| || || || || ||| | || || || | ||
Sbjct 435300 ATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTCT 435241
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| |||| || ||| ||||| || | || || || ||
Sbjct 435240 GACACCATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAGGGAATCCCACCTGATCAA 435181
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || |||||||| || |||||||||||| || ||| | ||||| |||
Sbjct 435180 CAGAGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGATTACAAC 435121
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || |||||||| |||| |||||| |||| || ||||
Sbjct 435120 ATCCAAAAGGAGTCCACTCTTCACTTGGTTCTTAGATTGAGAGGTGGTA 435072
>seq110
Length=92542
Score = 113 bits (124), Expect = 4e-20
Identities = 168/237 (71%), Gaps = 1/237 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| |||||||||||||| ||||| || ||||| || || |||||| | || || || |
Sbjct 53131 AAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACTATCACCTTGGAGGTCGAGTCT 53072
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||| | ||||| || | || ||| |||||||| | || || ||
Sbjct 53071 TCGGACACGATCGACAATGTCAAGCAAAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 53012
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|| ||| | | || || ||||| |||||||||||||| | ||| | |||||
Sbjct 53011 CAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACTCTTTCTGATTAC 52952
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AGAAG 31425
|| ||||| || ||||| || ||||| |||| | ||| |||| || ||| |||||
Sbjct 52951 AATATTCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGTAAGAAG 52895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765402597680
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