Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq137 111 3e-19 >seq137 Length=354847 Score = 111 bits (122), Expect = 3e-19 Identities = 350/533 (66%), Gaps = 22/533 (4%) Strand=Plus/Minus Query 35330 CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGA 35389 ||||| ||||| | || || || | || | |||||| | || || |||| || Sbjct 274609 CACATATGGAAAGGCAACGGTTCAAGAGAGTATTTGGATTCAATTGGATTGACCGATCGA 274550 Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT 35449 | || | |||||||| || ||||||||||||||||| | |||||||||||||||||| Sbjct 274549 GAAGTTGATGATTTGGGTCCAATATACGGATTCCAATGGAGGCATTTTGGTGCTGAATAT 274490 Query 35450 GATACCTGTTCTTCCGATTATACTGG-AAAGGGTATTGATCAATTGGCCAATATACTAAA 35508 || | || | | |||||||| || ||||||| ||||||| | ||||| | | | Sbjct 274489 GAAAATTGCCATACAGATTATACAGGTAAAGGGT-TTGATCAGATAGCCAACGTTATTCA 274431 Query 35509 GACCCTGAGAGA-AAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGG 35567 ||| | | ||| | || || | || | || || | | ||||||||||| | Sbjct 274430 TACCATTA-AGACGGACCCTTATAACAGGCGAATCCTTCTTTCTGCATGGAATCCACCAG 274372 Query 35568 ATCTTCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGT------- 35619 | || | ||||| || || ||||| || || ||| ||| || ||||| Sbjct 274371 CTTTTAAGAAGATGGCACTACCACCATGTCATGTGTTCTG-TCAGTTCTATGTTAGTTAC 274313 Query 35620 ------GGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTT 35673 ||| || || |||| || || |||||||| || | || | || || Sbjct 274312 AAGACCGGCAAACCCAG-ATTGAACTGTCAAATGTATCAGAGATCATGCGACATGGGATT 274254 Query 35674 GGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCA-GTATGG 35732 ||| || || ||||| |||||||||||| |||| || ||| || |||| |||| | | | Sbjct 274253 GGGTGTTCCTTTCAACATTGCATCATACGCTCTACTCACTTATATGATTGCCATGGTTTG 274194 Query 35733 TGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCC 35792 | | | | |||| || ||||| |||| | | |||||| | || || ||||| | Sbjct 274193 T-GATATGGAACCAGGTGAGTTCATCCATGTTATGGGTGACTCTCATATCTATAAAGATC 274135 Query 35793 ACATTGAGGTGTTAAAGAAGCAGTTGTGCCGCGTCCCTAGACCATTCCCTAAG 35845 | || ||| || |||||||| | | | ||| | |||||||||||| Sbjct 274134 ATGTTAAGGCTTTGGAGAAGCAGATTGAAAGAGAGCCTCGTCCATTCCCTAAG 274082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989581730450945