Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq115 316 3e-81 seq173 159 4e-34 >seq115 Length=359903 Score = 316 bits (350), Expect = 3e-81 Identities = 1229/1907 (64%), Gaps = 51/1907 (3%) Strand=Plus/Minus Query 62039 GTCCAATGTGAATTGAATGGGA---GCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||||| ||||| || |||| | |||| || || ||||| | |||||||| || Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGT---GTACGCAAGTAGTACATACC 6789 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCG 62154 || || ||||| ||||||| || || ||||| || | || ||| | | Sbjct 6788 AGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGG 6729 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 | ||| | ||| |||||||| || || |||| |||| | || || ||||| |||| Sbjct 6728 GGATTGCAA-ATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAG 6670 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTT-AATA 62273 |||| | |||| | || |||| || ||||||| || ||| | | ||| ||| Sbjct 6669 CCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATT 6610 Query 62274 TCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTACCATAATCCTA---TTC 62327 ||| |||| | |||| || ||||| || || ||| ||| | |||| || | | Sbjct 6609 TCT-CTGGCACATTTGGTAAGTTCTGGATAGAACCATTATC---CTTAATGATAAAGTCC 6554 Query 62328 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACT 62387 || || ||| | |||| | | ||| | || | | | | || || ||||| Sbjct 6553 TTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACA 6494 Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 | ||||| || || | ||| ||||| | || || || || | || || | Sbjct 6493 ATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAA 6434 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 | || || | |||| ||| |||| || |||||||| ||||| ||||||| || || Sbjct 6433 CATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAAC 6374 Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567 ||| || | || | | || || | | |||| | ||||| | ||||||||| Sbjct 6373 GAATTCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAAGATCG 6314 Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627 | ||| | |||||| || ||||| ||| || ||||||| | Sbjct 6313 GTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCG 6254 Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 ||||| ||| | ||||||| ||||||||| |||| | || |||||| | | Sbjct 6253 TATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGG 6194 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || | || |||||||||| |||| | || | ||||| || || || || || || Sbjct 6193 TATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGG-TAG 6135 Query 62748 TTTAAGA--GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 ||| ||| ||| | || || | ||||| | ||| ||| | |||||||||| || Sbjct 6134 ACGAAGCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTC 6076 Query 62806 TCTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62864 || |||| || ||| | | | ||||||| ||||| || || | ||||||| | | || Sbjct 6075 TCATATTCGA-ATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTC 6017 Query 62865 AGATTTC---TGACAA--TTACT---TTGACCACATCCTTCAGT-TTGAGAAAATCAAAT 62915 | || | | |||| ||| | |||| || ||| |||| || || Sbjct 6016 AAGTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGAT 5957 Query 62916 CGCCCATCTATTACAAACA-TGTTCAATGCAACAGAT----GCCAGATTACACACGGCTA 62970 | ||||| | ||| | || | | | |||||| |||| |||||| || | | Sbjct 5956 TTCTCATCTGATTCAACGAATGCTGGAAG--ACAGATATTAGCCAAATTACAGACACCAA 5899 Query 62971 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030 | || || | | |||| | | |||| ||| | || |||| ||||| | Sbjct 5898 CTTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTAC 5839 Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090 | | ||| | ||||||||||||| ||||||| ||||| || || | ||||||||||||| Sbjct 5838 CGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTAC 5779 Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT- 63149 |||||||| | || | || | |||| | ||| | | | ||||| | || | Sbjct 5778 CAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGAC---AGTTC 5722 Query 63150 TTGTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAA 63207 || || | | | ||| |||| ||| || |||||| ||||||||| || || | | Sbjct 5721 TTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGA 5662 Query 63208 CATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 63267 ||| | | | |||| |||| || | | ||| | ||| || | || | || Sbjct 5661 CATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCA 5602 Query 63268 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTT 63327 | || ||||| || ||||||||||||||||||||| || | ||| | | |||| | Sbjct 5601 CACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCT 5542 Query 63328 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63387 | || || || ||| | | ||||| ||| | | ||||| | |||||| |||| Sbjct 5541 CTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTT 5482 Query 63388 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63447 |||| || | ||| || | ||||| || ||||| || || ||||| | ||||| || | Sbjct 5481 CCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGGCAG 5422 Query 63448 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63507 | | || | || | | ||| ||||| ||||| || || ||||||||||||| | | Sbjct 5421 TACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAA 5362 Query 63508 TATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63567 | || ||| | |||||||| ||| || | ||| || || || || |||||| Sbjct 5361 TGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAG 5302 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 | ||||| ||||| | || || || || ||||| ||||| ||| ||||| ||||| Sbjct 5301 AAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGG 5242 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 || | ||||| |||||| || | | || ||| || ||||| || ||||| || | Sbjct 5241 CAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTG 5182 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 |||| ||||| || | || ||| | || ||||| | ||||| | || |||| Sbjct 5181 AAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAATAT 5122 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTT 63807 | | ||| || || || || |||||||| | | ||||||||||| || | | || Sbjct 5121 CACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGACTT 5062 Query 63808 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-- 63865 | ||| ||| | | ||| || || |||||| ||||| ||||| ||||| ||||| Sbjct 5061 TACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAATTGTAGT 5002 Query 63866 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912 ||||| |||| ||||| | || | || || | || |||||||| Sbjct 5001 TGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957 >seq173 Length=13397 Score = 159 bits (176), Expect = 4e-34 Identities = 395/594 (66%), Gaps = 14/594 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||| |||||||| || || | || | ||||| || || || || Sbjct 11184 CAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGA 11125 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | || | ||| || | ||| || || ||||| || |||||||| ||||| Sbjct 11124 CCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAAC 11065 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGT 33758 | || || | || |||||||||| | |||||| | || |||| ||| || Sbjct 11064 ACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGTACAAGGCGTCCTTGTTATTC 11005 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | | ||||| ||||| | || | | || || || || |||||||| Sbjct 11004 ATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTGGAATGGTCTCGATGGCATTG 10945 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || | |||| ||| || |||| | || || || || | ||| ||| ||| | Sbjct 10944 AACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCTCAAGCAATAGAGAGTACGTC 10885 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || ||||| || |||| ||||| || |||||||| ||| ||||| | | | Sbjct 10884 TCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGAATGCTCTTGCCTCAGGCAGC 10825 Query 33939 TGCACTT-CTGTACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCATCACTGGCT 33995 || || | ||| | || |||||| | || || |||| || | |||||| ||| Sbjct 10824 TGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCATCGACCAATCCATCGGATGCT 10768 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT----TATT 34051 || || || ||||| || ||| || ||| | |||| ||| ||| || | || Sbjct 10767 GCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT-TGGCGTTCATTCGGTTGTT 10709 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 ||| || || ||| || || | ||| | ||||| | |||||||| || |||||||| Sbjct 10708 CCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCCGTCCAAAAGGAGGCCTCTGC 10649 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 ||| || ||||| | |||||| || | || || || ||||| || || ||||| Sbjct 10648 CTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGGAACATCACGAATCT 10595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816190783120