Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq115 187 2e-42 seq96 154 1e-32 >seq115 Length=359903 Score = 187 bits (206), Expect = 2e-42 Identities = 1094/1728 (63%), Gaps = 71/1728 (4%) Strand=Plus/Minus Query 36949 GCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTA 37008 |||||||||||||| ||||| || | | | |||| || || ||||||||||| || | Sbjct 6685 GCACCTCTGTCGGCAGCCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGA 6626 Query 37009 TATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAAC 37065 || | || || | || ||||| | || | || | || ||||||||||||| | Sbjct 6625 TACAATTTCTTGAATTTCTCTGGCACATTTGGTAAGTTCTGGATAGAACCATTATC---C 6569 Query 37066 ACAATTGTA---TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAAT 37122 ||| || | ||| || ||||| |||| ||| || || | || |||| Sbjct 6568 TTAATGATAAAGTCCTTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAAC 6509 Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 | | ||||| |||| ||| || || || | || ||||||||| ||| || ||| Sbjct 6508 ATATAAGGATTAACAATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGAT 6449 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || |||| || | | || || | || | || ||||||||||||||||| |||||| Sbjct 6448 GTGAATGGCTCGAAACATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATT 6389 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATT----AATTCTCTTTTTTAGTTC 37298 ||||| | || | ||| |||||||| | | || | || ||| || || Sbjct 6388 GGTGCCAATAACAACGAATTCCTCAATCC---TTTCTTGGCGACTTGAGCCTTTAAG-TC 6333 Query 37299 ATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTT 37358 || ||| ||||| | ||| ||||| ||||| ||||||||||||||| || |||||||| Sbjct 6332 ATCCCAGTCCCAAAGATCGGTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTT 6273 Query 37359 ACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT 37418 | ||||| || | | ||||| ||| | || | |||||||| || Sbjct 6272 AGATGCTGGCGATCCTTCGTATGTTGAATAGGTACCTTCCTCGGCAGCTAGTT---GACA 6216 Query 37419 AGATTCT---AGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGC 37475 ||||||| | ||| |||| |||| || || || || || ||||| ||| || Sbjct 6215 AGATTCTTCCAATGCAGCATGGTATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGC 6156 Query 37476 TTCTTCGCTATCGAATGCATAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACAC 37534 |||| || ||||| | ||| | || || | || ||| || | ||| || | || Sbjct 6155 TTCTGGACTCTCGAACG-GTAGACGAAGCATGAAGAAAGTATCTGCAAGACCTTGGATAC 6097 Query 37535 CGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAAT 37594 ||||| | || ||||||| | || |||| || || | ||| |||||||| || | Sbjct 6096 CGATAGCAATAGGTCTATTTCTCATATTCGAATTACGGGCCTCTGGAACTGGATAGTAGT 6037 Query 37595 TGATATCTATTATTTTATTTAGATT---TTTAAC-----TAGT-ATTT-TCGTAATTATT 37644 | | ||||| | | | || | || |||| |||| |||| ||||| || Sbjct 6036 TCCTGTCTATAACTCTGTTCAAGTTACGAGTAACAACCTTAGTGATTTGATGTAAT--TT 5979 Query 37645 CTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGAA--------- 37695 ||||| || |||| || ||| | || | | | | | |||||||| Sbjct 5978 CTCAA--AGTTGAAC--CAAGACGAT-TTCTCATC----TGATTCAACGAATGCTGGAAG 5928 Query 37696 ATAGATCCTAG----ATTACATACAGCAACTTCATCTTCGTTACTA-AATTGTATAATCT 37750 | |||| ||| |||||| ||| ||||||| | || || | | ||| | || || Sbjct 5927 ACAGATATTAGCCAAATTACAGACACCAACTTC-TTTTGGTGAGGAGTATTCAACAACCT 5869 Query 37751 CTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTAC 37810 | || | || || |||| || || | ||| ||||||| ||| | |||| Sbjct 5868 CACAGCATAAGTTGGATGACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTAC 5809 Query 37811 AAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATT 37870 ||| |||||| || | || | || || || ||| |||| ||||| | ||| | Sbjct 5808 AAGCATCTTTGTAGATCATGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGAT 5749 Query 37871 TCCATAAACTTCT-TGCTTTAAC-GATC-GCTTTAAtttttttCTTTGTTTCGTATTCTA 37927 ||| || ||| | ||| || || | || || | ||| | |||| |||| Sbjct 5748 ACCA-AAGCTTTTGTGCCTTGACAGTTCTTCTACCACGACCTTCCT--TTTCATATTTGG 5692 Query 37928 TATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGAC 37987 | || ||||| | || |||| || | |||||| | | || ||| ||| | || Sbjct 5691 TGTACAATTTTTCGAACTCATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTG 5632 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 | | | || |||| ||| || ||| || || | ||| || | |||||| | ||| | Sbjct 5631 AGAACAAAGTCCATGGACCATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAA 5572 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA 38107 || | || ||||| || |||| ||||| || || ||| | | | | Sbjct 5571 GAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGA 5512 Query 38108 GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTT 38167 |||||||| ||||| || ||||| ||||| | ||| | | || || || || | | Sbjct 5511 TGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCT 5452 Query 38168 TATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTA 38227 | | ||| || |||| | |||||| | || | || | | | | |||||| | | Sbjct 5451 TGTTACCACCTTGATCGACATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGA 5392 Query 38228 TACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTA 38287 |||||||||| | || || |||| | || || | || |||| || || ||| | Sbjct 5391 TACCATTAGAAGTACCATTGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGA 5332 Query 38288 TCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAA 38347 | || || || ||||| || ||| || ||||||||||| || || || ||||| Sbjct 5331 TATGCATACCGATACCACCGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGT 5272 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 | |||||||| || |||||| || || | | | ||||| |||||| ||||| Sbjct 5271 AGATACCTTCGATGGAGTCATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTC 5212 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 ||||| || || || || || || || || ||||| |||| | || |||| Sbjct 5211 TAGGAGTACCTGCATTGAACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGA 5152 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 || || | || | || | | ||||||| || || ||||| | | || | || Sbjct 5151 GGTTGTAAGACTCAAGAACTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCA 5092 Query 38528 TTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTT 38587 | || | ||| || ||||| || | |||| || | |||| | ||| || || Sbjct 5091 TCAGTAAATGCTGAGGTCTCTCGGCGACTTTACCGTTGATTCTAAGCAAATATGACCGTT 5032 Query 38588 CTAATGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTA 38633 | || ||||| | || |||||| | || ||| ||||||||||||| Sbjct 5031 CCAACGTTTTGAAACCGAAATAATTGTAGTTGA--AATCTCTATCGTA 4986 >seq96 Length=143779 Score = 154 bits (170), Expect = 1e-32 Identities = 600/922 (65%), Gaps = 22/922 (2%) Strand=Plus/Plus Query 37699 GATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAG 37758 || |||| |||||| || |||||||| || | | | ||| | || ||| ||| Sbjct 91970 GAACCTAAATTACAAACGGCAACTTCGTCCTTGGAAGAGTATTCAACAACCTCACAACAA 92029 Query 37759 AGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCT 37818 ||||| ||| | || ||||| | ||| ||| || ||||| |||||| | |||| Sbjct 92030 AGATTGGATGATTTGATGGTTCCAAGATTCTGTTGGTTTGATTTGGCATTACAGGCATCT 92089 Query 37819 TTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAA 37878 ||||| || | | || || || |||| |||| | ||| | ||| | Sbjct 92090 TTATAGAGAAGGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACC 92149 Query 37879 CTTCTTGCTTTAACGATC-GCTTTA-AtttttttCTT-TGTTTCGTATTCTATATATAAT 37935 ||||||| || |||| ||||| || | | | || ||| || || | |||||||| Sbjct 92150 TTTCTTGCCTT---GATCTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAAT 92206 Query 37936 TTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGA-CATTCGCATGGACACATTAG 37994 | ||||| | | ||||| ||||| | | ||||||| || | | | | | | ||| Sbjct 92207 GTATTAAACTTGTCACCCCAAACATCAGAAAGTCCTGGAGCAGTATCCTC-AGAAAATAG 92265 Query 37995 AGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGT 38054 | ||| ||||| ||| || | || ||||||||| || || | |||||| ||| Sbjct 92266 ACTCCACATGTCATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATA 92325 Query 38055 AAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTA-AGCTTAGAAAAT 38113 ||||| || ||| | |||||| || || ||||||||| | | | |||| | Sbjct 92326 AAATAGATGCCTGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAAT-T 92384 Query 38114 CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCAC 38173 | | || ||| | |||||||||||||| ||| | ||||| ||||| ||||||| | Sbjct 92385 CCATTACATCTGAGTGCCATGGTTCTAAATATGCACAGATTGCCCCTGGCCTTTTATTTC 92444 Query 38174 CTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCAT 38233 | || |||| || |||| | | ||| | | | |||| ||| || || || ||| Sbjct 92445 CCCCTTGATCAACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCAC 92504 Query 38234 TAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACA 38293 ||||| |||| ||| |||| || ||||| || ||| |||| | |||||| || || Sbjct 92505 TAGATGTGCCATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAATGTGCA 92564 Query 38294 ATCCTATTCCACCTGCATG-TTTTGATATTAAAGCGCATTGTTTTAAC-GTATCAAATAT 38351 || || ||||| | ||| || || || | ||| |||| | | ||| || | ||||| Sbjct 92565 TCCCAATACCACCAG-ATGCCTTGGAAATCATAGCACATT-TGTGAACGGTCTTGAATAT 92622 Query 38352 ACCTTCTATACTGTCATCCTTT--ATTGGTAGTATAAAACAACTAGACATTTGAGGCAAT 38409 || || | ||| |||| | || | || || || || | || || ||| Sbjct 92623 TCCGTCCAACGAATCA--CTTTCAAGTGCCACTAAGAAGCACGATGATAAATGCGGGAAT 92680 Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 ||||| || ||||| ||||| || |||||||| | ||| || ||| || | || | Sbjct 92681 TCCGTTCCAGCATTAAACAATGTCGGTGATGCATG-AAGAA-GATACTTCTGAGACATTA 92738 Query 38470 --TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 | || | | ||| || |||| | | | | | |||| | ||||| || |||| Sbjct 92739 GGTGGTAACTCTGTATAGCAGCATCCAAGTTATCCTCATGAAGAGATAGAGCCACTCTCA 92798 Query 38528 TTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTT 38587 ||| | || ||||||| |||| |||| |||| ||||| ||||| ||| | | Sbjct 92799 TTAATAGATATTGTGGTGTTTCATGCGGTTTACCATTCACCTTAAGAAGATATGATCTCT 92858 Query 38588 CTAATGTTTTTATTCCAAAATA 38609 ||| |||| | | ||||||||| Sbjct 92859 CTAGTGTTCTAAATCCAAAATA 92880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523751675760