Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq115 293 3e-74
seq96 161 1e-34
seq173 152 7e-32
>seq115
Length=359903
Score = 293 bits (324), Expect = 3e-74
Identities = 1223/1907 (64%), Gaps = 51/1907 (3%)
Strand=Plus/Minus
Query 64832 GTCCAATGTGAATTGAATGGGA---GCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888
||||| ||||| || |||| | |||| || || ||||| | |||||||| ||
Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGT---GTACGCAAGTAGTACATACC 6789
Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCG 64947
|| || ||||| ||||||| || || ||||| || | || ||| | |
Sbjct 6788 AGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGG 6729
Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007
| ||| | ||| |||||||| || || |||| |||| | || || ||||| ||||
Sbjct 6728 GGATTGCAA-ATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAG 6670
Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATA 65066
|||| | |||| | || |||| || ||||||| || ||| | | ||| |||
Sbjct 6669 CCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATT 6610
Query 65067 TCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTA---TTC 65120
||| |||| | |||| || ||||| || || ||| ||| | |||| || | |
Sbjct 6609 TCT-CTGGCACATTTGGTAAGTTCTGGATAGAACCATTATC---CTTAATGATAAAGTCC 6554
Query 65121 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 65180
|| || ||| | |||| | | ||| | || | | | | || ||||||||
Sbjct 6553 TTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACA 6494
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
| || || || || | ||| ||||| | || || || || | || || | |
Sbjct 6493 ATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAA 6434
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
| || || | |||| ||| |||| || |||||||| ||||| ||||||| || ||
Sbjct 6433 CATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAAC 6374
Query 65301 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 65360
||| || | || | | || || | | |||| ||||| | |||||||||
Sbjct 6373 GAATTCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAAGATCG 6314
Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 65420
| ||| ||| || ||||| ||| || ||||||| |
Sbjct 6313 GTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCG 6254
Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480
||||| || | ||||||| ||||||||| |||| | || |||||| | |
Sbjct 6253 TATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGG 6194
Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540
|| | || || ||||||| |||| | || | ||||| | || || || || ||
Sbjct 6193 TATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGG-TAG 6135
Query 65541 TTTAAGA--GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
||| ||| ||| | ||||| | ||||| | ||| ||| | |||||||||| ||
Sbjct 6134 ACGAAGCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTC 6076
Query 65599 TCTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 65657
|| |||| || ||| | | | ||||||| ||||| || || | ||||||| | | ||
Sbjct 6075 TCATATTCGA-ATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTC 6017
Query 65658 AGATTTC---TGACAA--TTACT---TTGACCACATCCTTCAGT-TTGAGAAAATCAAAT 65708
| || | | |||| ||| | |||| || ||| |||| || ||
Sbjct 6016 AAGTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGAT 5957
Query 65709 CGCTCATCTATTACAAACA-TGTTCAATGCAACAGAT----GCCAGATTACAAACGGCTA 65763
||||||| | ||| | || | | | |||||| |||| |||||| || | |
Sbjct 5956 TTCTCATCTGATTCAACGAATGCTGGAAG--ACAGATATTAGCCAAATTACAGACACCAA 5899
Query 65764 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 65823
| || || | | |||| | | |||| ||| | || |||| || || |
Sbjct 5898 CTTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTAC 5839
Query 65824 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 65883
| | ||| | ||||||||||||| ||||||| ||||| || || | |||||||||||||
Sbjct 5838 CGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTAC 5779
Query 65884 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT- 65942
|||||||| | || | || | |||| | ||| | | | ||||| | || |
Sbjct 5778 CAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGAC---AGTTC 5722
Query 65943 TTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 66000
|| || | | ||| |||| ||| || |||||| ||||||||| || || | |
Sbjct 5721 TTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGA 5662
Query 66001 CATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 66060
||| | | |||||| |||| || | | ||| | ||| || | || | ||
Sbjct 5661 CATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCA 5602
Query 66061 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTT 66120
| || ||||| || ||||||||||||||||||||| || ||||| | || |||| |
Sbjct 5601 CACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCT 5542
Query 66121 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTT 66180
| || || || ||| | | ||||| ||| | | ||||| |||||| ||||
Sbjct 5541 CTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTT 5482
Query 66181 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 66240
|||| || | ||| || | ||||| || ||||| || || ||||| | ||||| || |
Sbjct 5481 CCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGGCAG 5422
Query 66241 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGA 66300
| | || | || | | ||| ||||| |||||||| || ||||||||||| || | |
Sbjct 5421 TACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAA 5362
Query 66301 TATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 66360
| || ||| | |||||||| ||| || | ||| || || || || ||||||
Sbjct 5361 TGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAG 5302
Query 66361 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 66420
| ||||| ||||| | || || ||||| ||||| || || || ||||| |||||
Sbjct 5301 AAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGG 5242
Query 66421 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 66480
|| | ||||| |||||| || | | | ||| || ||||| || ||||| || |
Sbjct 5241 CAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTG 5182
Query 66481 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 66540
|||| ||||| || | || ||| | || ||||| | ||||| | || ||||
Sbjct 5181 AAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAATAT 5122
Query 66541 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 66600
| | ||| || || || || |||||||| | | ||||||||||| || ||| |
Sbjct 5121 CACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGACTT 5062
Query 66601 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-- 66658
| ||| ||| | | ||| || || |||||| ||||| ||||| ||||| |||||
Sbjct 5061 TACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAATTGTAGT 5002
Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 66705
||||| |||| ||||| | || | ||||| | | ||||||||
Sbjct 5001 TGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957
>seq96
Length=143779
Score = 161 bits (178), Expect = 1e-34
Identities = 356/525 (68%), Gaps = 14/525 (3%)
Strand=Plus/Plus
Query 65814 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 65871
||||||||||| | ||| ||||| || | ||| | ||||| ||||| ||||| ||||
Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099
Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931
||| || ||||||||||| ||||||| | |||| | |||||| || ||||
Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159
Query 65932 TTATTATAGATTTG--TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 65989
| || | |||| |||||||||||| | || || |||||| ||| | ||||
Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217
Query 65990 GTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAACGACCACTCTC 66048
||| |||||||||| | ||| ||| || | |||| | | | | ||||
Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGT 92276
Query 66049 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTC 66108
| ||| || |||| ||||||||| | || |||||||| | || ||||| || |
Sbjct 92277 CATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCC 92336
Query 66109 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAT 66168
||| | ||| || || || ||||||| ||||||| | ||| |||| | |||
Sbjct 92337 TGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTG 92396
Query 66169 AATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 66226
| ||||| ||||| || ||||| | || | || |||| ||| ||||| || |||||
Sbjct 92397 AGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454
Query 66227 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 66286
| ||| || ||| | |||| || | |||||||| ||| ||| | ||||| ||
Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514
Query 66287 ATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT 66331
||| || || || |||||| |||| ||| | | |||||||||
Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559
>seq173
Length=13397
Score = 152 bits (168), Expect = 7e-32
Identities = 593/913 (65%), Gaps = 23/913 (3%)
Strand=Plus/Minus
Query 35843 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 35902
||| |||| | |||||| || || || || || ||| | || ||||| || ||
Sbjct 11498 TCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTTC 11440
Query 35903 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtt 35962
|| || ||| | || || || || ||||||||||| |||||||| | | || || |
Sbjct 11439 GTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGACC 11380
Query 35963 tttttAAATCCCAATTCAGAA-ATCAATCTATCTGCGACA-AATTCTATATATGTTTTCA 36020
|| | | |||| | ||| | |||||| || || ||| || || | ||| ||
Sbjct 11379 TTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGC-ACAGAAGTCAACGTATTCACACA 11322
Query 36021 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGT 36079
|||| || || ||||| || | | ||| || | || | | ||||| |||| |
Sbjct 11321 TCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT 11262
Query 36080 TCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTT--TCTTCACTCGGTGGATACA 36137
| ||| ||| || || || || || | || || | |||| ||| || |||| |
Sbjct 11261 -CGATATCGACGGCCTCCGTCATGATTC-TCTTGATGATGGTCTT-ACTAGGAGGATGCT 11205
Query 36138 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 36197
|| ||| || | | || ||||| || |||||||||||| || || | || |
Sbjct 11204 TCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAA 11145
Query 36198 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 36257
||||| || || || || || ||||| | || | ||| || | ||| || || || |
Sbjct 11144 GCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAG 11085
Query 36258 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 36317
|||| ||||| || ||||| | || || | || |||||||||| | |||||| | |
Sbjct 11084 CAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGT 11025
Query 36318 ---AACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 36374
| || | ||| || ||||| | | ||||| ||||| | || | | |
Sbjct 11024 ACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTG 10965
Query 36375 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 36434
| || ||||| || ||||| || | |||| ||| || |||| | || || || |
Sbjct 10964 GAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCT 10905
Query 36435 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 36494
||| ||| ||| ||| | || || ||||| || |||| || || || |||||||
Sbjct 10904 CAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGA 10845
Query 36495 AACATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAATCGTTCT--GCTAAATTTTCAT 36551
| ||| ||||| | | ||| | || ||| | || ||||| || || || ||||
Sbjct 10844 ATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCAT 10788
Query 36552 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 36611
|| | ||| || ||||| || || ||||| || ||| || ||| | ||||
Sbjct 10787 CGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT 10728
Query 36612 TTG-GT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 36668
| | || || | || ||||| || || ||| || || | ||| | ||||| | |
Sbjct 10727 TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCCG 10668
Query 36669 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 36728
||||||| || ||||||||||| || ||||| | |||||| || | || ||||| || |
Sbjct 10667 TCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGGA 10608
Query 36729 AAATAACAAATCT 36741
| || || |||||
Sbjct 10607 ACATCACGAATCT 10595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658171327338360
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