Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq115 293 3e-74 seq96 161 1e-34 seq173 152 7e-32 >seq115 Length=359903 Score = 293 bits (324), Expect = 3e-74 Identities = 1223/1907 (64%), Gaps = 51/1907 (3%) Strand=Plus/Minus Query 64832 GTCCAATGTGAATTGAATGGGA---GCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 ||||| ||||| || |||| | |||| || || ||||| | |||||||| || Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGT---GTACGCAAGTAGTACATACC 6789 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCG 64947 || || ||||| ||||||| || || ||||| || | || ||| | | Sbjct 6788 AGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGG 6729 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | ||| | ||| |||||||| || || |||| |||| | || || ||||| |||| Sbjct 6728 GGATTGCAA-ATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAG 6670 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATA 65066 |||| | |||| | || |||| || ||||||| || ||| | | ||| ||| Sbjct 6669 CCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATT 6610 Query 65067 TCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTA---TTC 65120 ||| |||| | |||| || ||||| || || ||| ||| | |||| || | | Sbjct 6609 TCT-CTGGCACATTTGGTAAGTTCTGGATAGAACCATTATC---CTTAATGATAAAGTCC 6554 Query 65121 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 65180 || || ||| | |||| | | ||| | || | | | | || |||||||| Sbjct 6553 TTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACA 6494 Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 | || || || || | ||| ||||| | || || || || | || || | | Sbjct 6493 ATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAA 6434 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 | || || | |||| ||| |||| || |||||||| ||||| ||||||| || || Sbjct 6433 CATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAAC 6374 Query 65301 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 65360 ||| || | || | | || || | | |||| ||||| | ||||||||| Sbjct 6373 GAATTCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAAGATCG 6314 Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 65420 | ||| ||| || ||||| ||| || ||||||| | Sbjct 6313 GTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCG 6254 Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| || | ||||||| ||||||||| |||| | || |||||| | | Sbjct 6253 TATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGG 6194 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 || | || || ||||||| |||| | || | ||||| | || || || || || Sbjct 6193 TATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGG-TAG 6135 Query 65541 TTTAAGA--GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 ||| ||| ||| | ||||| | ||||| | ||| ||| | |||||||||| || Sbjct 6134 ACGAAGCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTC 6076 Query 65599 TCTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 65657 || |||| || ||| | | | ||||||| ||||| || || | ||||||| | | || Sbjct 6075 TCATATTCGA-ATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTC 6017 Query 65658 AGATTTC---TGACAA--TTACT---TTGACCACATCCTTCAGT-TTGAGAAAATCAAAT 65708 | || | | |||| ||| | |||| || ||| |||| || || Sbjct 6016 AAGTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGAT 5957 Query 65709 CGCTCATCTATTACAAACA-TGTTCAATGCAACAGAT----GCCAGATTACAAACGGCTA 65763 ||||||| | ||| | || | | | |||||| |||| |||||| || | | Sbjct 5956 TTCTCATCTGATTCAACGAATGCTGGAAG--ACAGATATTAGCCAAATTACAGACACCAA 5899 Query 65764 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 65823 | || || | | |||| | | |||| ||| | || |||| || || | Sbjct 5898 CTTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTAC 5839 Query 65824 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 65883 | | ||| | ||||||||||||| ||||||| ||||| || || | ||||||||||||| Sbjct 5838 CGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTAC 5779 Query 65884 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT- 65942 |||||||| | || | || | |||| | ||| | | | ||||| | || | Sbjct 5778 CAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGAC---AGTTC 5722 Query 65943 TTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 66000 || || | | ||| |||| ||| || |||||| ||||||||| || || | | Sbjct 5721 TTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGA 5662 Query 66001 CATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 66060 ||| | | |||||| |||| || | | ||| | ||| || | || | || Sbjct 5661 CATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCA 5602 Query 66061 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTT 66120 | || ||||| || ||||||||||||||||||||| || ||||| | || |||| | Sbjct 5601 CACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCT 5542 Query 66121 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTT 66180 | || || || ||| | | ||||| ||| | | ||||| |||||| |||| Sbjct 5541 CTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTT 5482 Query 66181 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 66240 |||| || | ||| || | ||||| || ||||| || || ||||| | ||||| || | Sbjct 5481 CCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGGCAG 5422 Query 66241 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGA 66300 | | || | || | | ||| ||||| |||||||| || ||||||||||| || | | Sbjct 5421 TACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAA 5362 Query 66301 TATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 66360 | || ||| | |||||||| ||| || | ||| || || || || |||||| Sbjct 5361 TGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAG 5302 Query 66361 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 66420 | ||||| ||||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 5301 AAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGG 5242 Query 66421 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 66480 || | ||||| |||||| || | | | ||| || ||||| || ||||| || | Sbjct 5241 CAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTG 5182 Query 66481 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 66540 |||| ||||| || | || ||| | || ||||| | ||||| | || |||| Sbjct 5181 AAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAATAT 5122 Query 66541 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 66600 | | ||| || || || || |||||||| | | ||||||||||| || ||| | Sbjct 5121 CACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGACTT 5062 Query 66601 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-- 66658 | ||| ||| | | ||| || || |||||| ||||| ||||| ||||| ||||| Sbjct 5061 TACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAATTGTAGT 5002 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 66705 ||||| |||| ||||| | || | ||||| | | |||||||| Sbjct 5001 TGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957 >seq96 Length=143779 Score = 161 bits (178), Expect = 1e-34 Identities = 356/525 (68%), Gaps = 14/525 (3%) Strand=Plus/Plus Query 65814 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 65871 ||||||||||| | ||| ||||| || | ||| | ||||| ||||| ||||| |||| Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931 ||| || ||||||||||| ||||||| | |||| | |||||| || |||| Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159 Query 65932 TTATTATAGATTTG--TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 65989 | || | |||| |||||||||||| | || || |||||| ||| | |||| Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217 Query 65990 GTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAACGACCACTCTC 66048 ||| |||||||||| | ||| ||| || | |||| | | | | |||| Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGT 92276 Query 66049 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTC 66108 | ||| || |||| ||||||||| | || |||||||| | || ||||| || | Sbjct 92277 CATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCC 92336 Query 66109 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAT 66168 ||| | ||| || || || ||||||| ||||||| | ||| |||| | ||| Sbjct 92337 TGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTG 92396 Query 66169 AATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 66226 | ||||| ||||| || ||||| | || | || |||| ||| ||||| || ||||| Sbjct 92397 AGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454 Query 66227 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 66286 | ||| || ||| | |||| || | |||||||| ||| ||| | ||||| || Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514 Query 66287 ATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT 66331 ||| || || || |||||| |||| ||| | | ||||||||| Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559 >seq173 Length=13397 Score = 152 bits (168), Expect = 7e-32 Identities = 593/913 (65%), Gaps = 23/913 (3%) Strand=Plus/Minus Query 35843 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 35902 ||| |||| | |||||| || || || || || ||| | || ||||| || || Sbjct 11498 TCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTTC 11440 Query 35903 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtt 35962 || || ||| | || || || || ||||||||||| |||||||| | | || || | Sbjct 11439 GTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGACC 11380 Query 35963 tttttAAATCCCAATTCAGAA-ATCAATCTATCTGCGACA-AATTCTATATATGTTTTCA 36020 || | | |||| | ||| | |||||| || || ||| || || | ||| || Sbjct 11379 TTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGC-ACAGAAGTCAACGTATTCACACA 11322 Query 36021 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGT 36079 |||| || || ||||| || | | ||| || | || | | ||||| |||| | Sbjct 11321 TCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT 11262 Query 36080 TCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTT--TCTTCACTCGGTGGATACA 36137 | ||| ||| || || || || || | || || | |||| ||| || |||| | Sbjct 11261 -CGATATCGACGGCCTCCGTCATGATTC-TCTTGATGATGGTCTT-ACTAGGAGGATGCT 11205 Query 36138 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 36197 || ||| || | | || ||||| || |||||||||||| || || | || | Sbjct 11204 TCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAA 11145 Query 36198 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 36257 ||||| || || || || || ||||| | || | ||| || | ||| || || || | Sbjct 11144 GCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAG 11085 Query 36258 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 36317 |||| ||||| || ||||| | || || | || |||||||||| | |||||| | | Sbjct 11084 CAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGT 11025 Query 36318 ---AACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 36374 | || | ||| || ||||| | | ||||| ||||| | || | | | Sbjct 11024 ACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTG 10965 Query 36375 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 36434 | || ||||| || ||||| || | |||| ||| || |||| | || || || | Sbjct 10964 GAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCT 10905 Query 36435 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 36494 ||| ||| ||| ||| | || || ||||| || |||| || || || ||||||| Sbjct 10904 CAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGA 10845 Query 36495 AACATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAATCGTTCT--GCTAAATTTTCAT 36551 | ||| ||||| | | ||| | || ||| | || ||||| || || || |||| Sbjct 10844 ATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCAT 10788 Query 36552 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 36611 || | ||| || ||||| || || ||||| || ||| || ||| | |||| Sbjct 10787 CGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT 10728 Query 36612 TTG-GT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 36668 | | || || | || ||||| || || ||| || || | ||| | ||||| | | Sbjct 10727 TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCCG 10668 Query 36669 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 36728 ||||||| || ||||||||||| || ||||| | |||||| || | || ||||| || | Sbjct 10667 TCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGGA 10608 Query 36729 AAATAACAAATCT 36741 | || || ||||| Sbjct 10607 ACATCACGAATCT 10595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171327338360