Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq115 331 1e-85 seq96 159 5e-34 seq173 156 6e-33 >seq115 Length=359903 Score = 331 bits (366), Expect = 1e-85 Identities = 1235/1910 (65%), Gaps = 57/1910 (3%) Strand=Plus/Minus Query 78711 GTCCAATGTGAATTGAATGGGA---GCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||||| ||||| || |||| | |||| || || ||||| | |||||||| || Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGT---GTACGCAAGTAGTACATACC 6789 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCG 78826 || || ||||| ||||||| ||||| ||||| || | || ||| | | Sbjct 6788 AGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGG 6729 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | ||| | ||| |||||||| || || |||| |||| | || || ||||| |||| Sbjct 6728 GGATTGCAA-ATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAG 6670 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATA 78945 |||| | |||| | || |||| || ||||||| || ||| | | ||| ||| Sbjct 6669 CCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATT 6610 Query 78946 TCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTA---TTC 78999 ||| |||| | |||| || ||||| || || ||| ||| | |||| || | | Sbjct 6609 TCT-CTGGCACATTTGGTAAGTTCTGGATAGAACCATTATC---CTTAATGATAAAGTCC 6554 Query 79000 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 79059 || || | | | |||| | | ||| | || | | | | || |||||||| Sbjct 6553 TTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACA 6494 Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 | || || || || | ||| ||||| | || || || || |||| || | Sbjct 6493 ATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAA 6434 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 |||| || | |||| ||| |||| || ||||| |||||||| ||||||| || || Sbjct 6433 CATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAAC 6374 Query 79180 CTATTTCTAAGACCGTATGATCT----GATTTTATCTTTTAGAGATTCCCAATCCCAAAG 79235 ||| || | || | ||| || || | | |||| ||||| |||||||| Sbjct 6373 GAATTCCTCAATCCTT----TCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAAG 6318 Query 79236 ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCC 79295 ||| | || |||||| | ||||||||| || ||||| ||| || ||||| Sbjct 6317 ATCGGTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCC 6258 Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 | ||||||| ||| | ||||||| | |||| || |||| | || ||||| | Sbjct 6257 TTCGTATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGC 6198 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 | || | || || || |||| |||| | || | |||||| | || || || || Sbjct 6197 ATGGTATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGG 6138 Query 79416 ATAATTTAAGA--GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 || ||| ||| ||| | ||||| | ||||| | ||| ||| | ||||||||| Sbjct 6137 -TAGACGAAGCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTA 6080 Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 | |||| |||| ||| | || ||||||| ||||| || || | ||||||| | | Sbjct 6079 TTTCTCATATTCGAATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTG 6020 Query 79534 TTGAGATTCCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAAT-----CAAAT 79587 || | || | || || | | || | | | || ||| ||| | ||| Sbjct 6019 TTCAAGTTAC-GAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGA 5961 Query 79588 CG---TC-CATCTATTACAAACA-TGTTCAACGCGACAGAT----GCCAGATTACAAACG 79638 || || ||||| | ||| | || | | | |||||| |||| |||||| || Sbjct 5960 CGATTTCTCATCTGATTCAACGAATGCTGGAAG--ACAGATATTAGCCAAATTACAGACA 5903 Query 79639 GCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATG 79698 | || || || | | |||| | | ||| ||| | ||| ||||||| Sbjct 5902 CCAACTTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATA 5843 Query 79699 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGA 79758 || || | ||| | ||||||||||||| ||||||| ||||| || || | ||||| ||| Sbjct 5842 GTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGA 5783 Query 79759 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 79818 |||||||||||| | || | || | |||| | ||| | | | ||||| | | Sbjct 5782 GTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACAGTT 5723 Query 79819 GACTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCC 79876 ||| || | | ||| |||| |||| || || ||| ||||||||| || || Sbjct 5722 --CTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGT 5665 Query 79877 AAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCT 79936 | |||||| | |||||| ||| ||| | | ||| | ||| |||| || | Sbjct 5664 AGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTT 5605 Query 79937 TTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 79996 || || ||||| || ||||||||||||||||||||| || | ||| | || |||| Sbjct 5604 CCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAA 5545 Query 79997 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 80056 ||| || || || ||| | | ||||| ||| | | ||||| | |||||| | Sbjct 5544 TCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAG 5485 Query 80057 GTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAG 80116 ||||||| || | ||| || | || || || ||||| || || ||||| | ||||| | Sbjct 5484 GTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGG 5425 Query 80117 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 80176 | || | || | || | | ||| ||||| |||||||| || ||||||||||| || | Sbjct 5424 CAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTG 5365 Query 80177 AGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 80236 || || ||| | |||||||| ||| || | ||| || || || || ||| Sbjct 5364 CAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTT 5305 Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 |||| ||||| ||||| | || || ||||| ||||| || || ||| ||||| ||| Sbjct 5304 TAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCA 5245 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 || || | ||||| |||||| || | | | ||| || ||||| || ||||| | Sbjct 5244 TGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTG 5185 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 80416 | ||||| ||||| || | || ||||| || ||||| | ||||| | || | Sbjct 5184 GTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAA 5125 Query 80417 TATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 80476 |||| | ||| || || || || |||||||| | | ||||||||||| || ||| Sbjct 5124 TATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGA 5065 Query 80477 TCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 80536 || || ||| | | ||| || || |||||| ||||| ||||| ||||| |||| Sbjct 5064 CTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAATTGT 5005 Query 80537 A--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584 | ||||| |||| ||||| | || | ||||| | | |||||||| Sbjct 5004 AGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957 >seq96 Length=143779 Score = 159 bits (176), Expect = 5e-34 Identities = 358/527 (68%), Gaps = 18/527 (3%) Strand=Plus/Plus Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 79750 || |||||||| | ||| ||||| || | ||| | ||||| ||||| ||||| |||| Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099 Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 79810 ||| || ||||||||||| ||||||| | |||| | |||||| || |||| Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159 Query 79811 TTATTATAGACTTG--TATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 79868 | || | ||| |||||||||||| | || || |||||||||| | |||| Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217 Query 79869 GTCTCCCCAAACATCGTCTAATCCAGGA-CA--TTCGTCAGGACACATCAACGACCACTC 79925 ||| ||||||||||| | ||| ||| || || |||| | || || |||| Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGTATCCTCAG--AAAATAGAC-TCCACAT 92274 Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 79985 ||||| || |||| ||||||||| | || |||||||| | || |||||||| Sbjct 92275 GTCATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATG 92334 Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045 |||| | || || || || ||||||| ||||||| | ||| |||| | ||| Sbjct 92335 CCTGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATC 92394 Query 80046 AGAATGCCACGGTTCCAAGTATATGGCC--ATAACTCCCGGTCGTTTGTTTCCTCCCTGA 80103 || ||||| ||||| || ||||| | || | || || | ||| ||||| || ||| Sbjct 92395 TGAGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGA 92452 Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163 || | ||| || ||| | |||| || | |||||||| ||| ||| | ||||| Sbjct 92453 TCAACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTG 92512 Query 80164 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 80210 ||||| || || || |||||| |||| || | | ||||||||| Sbjct 92513 CCATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559 >seq173 Length=13397 Score = 156 bits (172), Expect = 6e-33 Identities = 593/913 (65%), Gaps = 21/913 (2%) Strand=Plus/Minus Query 49644 ATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 49703 |||| |||| | |||||| || || || || || ||| | || ||||| || || Sbjct 11499 ATCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTT 11441 Query 49704 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAt 49763 || |||||| |||| || || || |||||||||||||| ||||| | | || || | Sbjct 11440 CGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGAC 11381 Query 49764 ttttttAAATCCCAATTCAGAA-ATCAATCTATCCGCGACA-AATTCTATATATGTTTTC 49821 || | | |||| | ||| | |||||| || || ||| || || | ||| | Sbjct 11380 CTTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGC-ACAGAAGTCAACGTATTCACAC 11323 Query 49822 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA-AGAAATTCTTG 49880 ||||| || || ||||| || | | ||| || | || | | ||||| |||| Sbjct 11322 ATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTC 11263 Query 49881 TTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTT-TCTTCACTCGGTGGATGCA 49939 | | || || || || || || || | | | | |||| ||| || |||||| Sbjct 11262 T-CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGTCTT-ACTAGGAGGATGCT 11205 Query 49940 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA 49999 || ||| || | | || ||||| || ||| |||||||| || || | || | Sbjct 11204 TCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAA 11145 Query 50000 GTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 50059 | ||||| || || || || || ||||| | || | ||| || | ||| || || || | Sbjct 11144 GCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAG 11085 Query 50060 CAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCAT 50119 |||| || || || ||||| | || || | || ||||||||||| | |||||| | | Sbjct 11084 CAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGT 11025 Query 50120 AACTGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 50176 | |||| ||| || ||||| | | ||||| ||||| | || | | | Sbjct 11024 ACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTG 10965 Query 50177 GCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTAT 50236 | || || || |||||||| || | |||| ||| || |||| | || || || | Sbjct 10964 GAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCT 10905 Query 50237 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 50296 | | ||| ||| ||| | || || ||||| || |||| ||||| || ||||||| Sbjct 10904 CAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGA 10845 Query 50297 AACATCTAGCCTCGGTAATCTGCA-CTTCTGTACAAAATCGTTC--AGCTAAATTTTCAT 50353 | ||| ||||| | | ||| | || ||| | || |||| || || || |||| Sbjct 10844 ATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCAT 10788 Query 50354 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT 50413 || | ||| || ||||| || || ||||| || ||| || | | | |||| Sbjct 10787 CGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT 10728 Query 50414 TGG-GT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 50470 ||| || || | || ||||| || || ||| || || | ||| | ||||| | | Sbjct 10727 TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCCG 10668 Query 50471 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 50530 ||||||| || ||||||||||| || ||||| | |||||| || | || || || |||| Sbjct 10667 TCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGGA 10608 Query 50531 AAATAACAAATCT 50543 | || || ||||| Sbjct 10607 ACATCACGAATCT 10595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267192873560