Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq115 331 1e-85
seq96 159 5e-34
seq173 156 6e-33
>seq115
Length=359903
Score = 331 bits (366), Expect = 1e-85
Identities = 1235/1910 (65%), Gaps = 57/1910 (3%)
Strand=Plus/Minus
Query 78711 GTCCAATGTGAATTGAATGGGA---GCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767
||||| ||||| || |||| | |||| || || ||||| | |||||||| ||
Sbjct 6845 GTCCACAGTGAACTGGATGGCACGTGCGGCAGCCTGT---GTACGCAAGTAGTACATACC 6789
Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCG 78826
|| || ||||| ||||||| ||||| ||||| || | || ||| | |
Sbjct 6788 AGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGG 6729
Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886
| ||| | ||| |||||||| || || |||| |||| | || || ||||| ||||
Sbjct 6728 GGATTGCAA-ATGAATATTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAG 6670
Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATA 78945
|||| | |||| | || |||| || ||||||| || ||| | | ||| |||
Sbjct 6669 CCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATT 6610
Query 78946 TCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTA---TTC 78999
||| |||| | |||| || ||||| || || ||| ||| | |||| || | |
Sbjct 6609 TCT-CTGGCACATTTGGTAAGTTCTGGATAGAACCATTATC---CTTAATGATAAAGTCC 6554
Query 79000 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 79059
|| || | | | |||| | | ||| | || | | | | || ||||||||
Sbjct 6553 TTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACA 6494
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
| || || || || | ||| ||||| | || || || || |||| || |
Sbjct 6493 ATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAA 6434
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|||| || | |||| ||| |||| || ||||| |||||||| ||||||| || ||
Sbjct 6433 CATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAAC 6374
Query 79180 CTATTTCTAAGACCGTATGATCT----GATTTTATCTTTTAGAGATTCCCAATCCCAAAG 79235
||| || | || | ||| || || | | |||| ||||| ||||||||
Sbjct 6373 GAATTCCTCAATCCTT----TCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAAG 6318
Query 79236 ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCC 79295
||| | || |||||| | ||||||||| || ||||| ||| || |||||
Sbjct 6317 ATCGGTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCC 6258
Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355
| ||||||| ||| | ||||||| | |||| || |||| | || ||||| |
Sbjct 6257 TTCGTATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGC 6198
Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415
| || | || || || |||| |||| | || | |||||| | || || || ||
Sbjct 6197 ATGGTATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCGAACGG 6138
Query 79416 ATAATTTAAGA--GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473
|| ||| ||| ||| | ||||| | ||||| | ||| ||| | |||||||||
Sbjct 6137 -TAGACGAAGCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTA 6080
Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533
| |||| |||| ||| | || ||||||| ||||| || || | ||||||| | |
Sbjct 6079 TTTCTCATATTCGAATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTG 6020
Query 79534 TTGAGATTCCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAAT-----CAAAT 79587
|| | || | || || | | || | | | || ||| ||| | |||
Sbjct 6019 TTCAAGTTAC-GAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGA 5961
Query 79588 CG---TC-CATCTATTACAAACA-TGTTCAACGCGACAGAT----GCCAGATTACAAACG 79638
|| || ||||| | ||| | || | | | |||||| |||| |||||| ||
Sbjct 5960 CGATTTCTCATCTGATTCAACGAATGCTGGAAG--ACAGATATTAGCCAAATTACAGACA 5903
Query 79639 GCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATG 79698
| || || || | | |||| | | ||| ||| | ||| |||||||
Sbjct 5902 CCAACTTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATA 5843
Query 79699 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGA 79758
|| || | ||| | ||||||||||||| ||||||| ||||| || || | ||||| |||
Sbjct 5842 GTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGA 5783
Query 79759 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 79818
|||||||||||| | || | || | |||| | ||| | | | ||||| | |
Sbjct 5782 GTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACAGTT 5723
Query 79819 GACTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCC 79876
||| || | | ||| |||| |||| || || ||| ||||||||| || ||
Sbjct 5722 --CTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGT 5665
Query 79877 AAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCT 79936
| |||||| | |||||| ||| ||| | | ||| | ||| |||| || |
Sbjct 5664 AGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTT 5605
Query 79937 TTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 79996
|| || ||||| || ||||||||||||||||||||| || | ||| | || ||||
Sbjct 5604 CCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAA 5545
Query 79997 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 80056
||| || || || ||| | | ||||| ||| | | ||||| | |||||| |
Sbjct 5544 TCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAG 5485
Query 80057 GTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAG 80116
||||||| || | ||| || | || || || ||||| || || ||||| | ||||| |
Sbjct 5484 GTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGG 5425
Query 80117 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 80176
| || | || | || | | ||| ||||| |||||||| || ||||||||||| || |
Sbjct 5424 CAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTG 5365
Query 80177 AGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 80236
|| || ||| | |||||||| ||| || | ||| || || || || |||
Sbjct 5364 CAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTT 5305
Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296
|||| ||||| ||||| | || || ||||| ||||| || || ||| ||||| |||
Sbjct 5304 TAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCA 5245
Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356
|| || | ||||| |||||| || | | | ||| || ||||| || ||||| |
Sbjct 5244 TGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTG 5185
Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 80416
| ||||| ||||| || | || ||||| || ||||| | ||||| | || |
Sbjct 5184 GTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAA 5125
Query 80417 TATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 80476
|||| | ||| || || || || |||||||| | | ||||||||||| || |||
Sbjct 5124 TATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGA 5065
Query 80477 TCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 80536
|| || ||| | | ||| || || |||||| ||||| ||||| ||||| ||||
Sbjct 5064 CTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAATTGT 5005
Query 80537 A--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584
| ||||| |||| ||||| | || | ||||| | | ||||||||
Sbjct 5004 AGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957
>seq96
Length=143779
Score = 159 bits (176), Expect = 5e-34
Identities = 358/527 (68%), Gaps = 18/527 (3%)
Strand=Plus/Plus
Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 79750
|| |||||||| | ||| ||||| || | ||| | ||||| ||||| ||||| ||||
Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099
Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 79810
||| || ||||||||||| ||||||| | |||| | |||||| || ||||
Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159
Query 79811 TTATTATAGACTTG--TATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 79868
| || | ||| |||||||||||| | || || |||||||||| | ||||
Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217
Query 79869 GTCTCCCCAAACATCGTCTAATCCAGGA-CA--TTCGTCAGGACACATCAACGACCACTC 79925
||| ||||||||||| | ||| ||| || || |||| | || || ||||
Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGTATCCTCAG--AAAATAGAC-TCCACAT 92274
Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 79985
||||| || |||| ||||||||| | || |||||||| | || ||||||||
Sbjct 92275 GTCATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATG 92334
Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045
|||| | || || || || ||||||| ||||||| | ||| |||| | |||
Sbjct 92335 CCTGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATC 92394
Query 80046 AGAATGCCACGGTTCCAAGTATATGGCC--ATAACTCCCGGTCGTTTGTTTCCTCCCTGA 80103
|| ||||| ||||| || ||||| | || | || || | ||| ||||| || |||
Sbjct 92395 TGAGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGA 92452
Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163
|| | ||| || ||| | |||| || | |||||||| ||| ||| | |||||
Sbjct 92453 TCAACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTG 92512
Query 80164 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 80210
||||| || || || |||||| |||| || | | |||||||||
Sbjct 92513 CCATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559
>seq173
Length=13397
Score = 156 bits (172), Expect = 6e-33
Identities = 593/913 (65%), Gaps = 21/913 (2%)
Strand=Plus/Minus
Query 49644 ATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 49703
|||| |||| | |||||| || || || || || ||| | || ||||| || ||
Sbjct 11499 ATCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTT 11441
Query 49704 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAt 49763
|| |||||| |||| || || || |||||||||||||| ||||| | | || || |
Sbjct 11440 CGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGAC 11381
Query 49764 ttttttAAATCCCAATTCAGAA-ATCAATCTATCCGCGACA-AATTCTATATATGTTTTC 49821
|| | | |||| | ||| | |||||| || || ||| || || | ||| |
Sbjct 11380 CTTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGC-ACAGAAGTCAACGTATTCACAC 11323
Query 49822 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA-AGAAATTCTTG 49880
||||| || || ||||| || | | ||| || | || | | ||||| ||||
Sbjct 11322 ATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTC 11263
Query 49881 TTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTT-TCTTCACTCGGTGGATGCA 49939
| | || || || || || || || | | | | |||| ||| || ||||||
Sbjct 11262 T-CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGTCTT-ACTAGGAGGATGCT 11205
Query 49940 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA 49999
|| ||| || | | || ||||| || ||| |||||||| || || | || |
Sbjct 11204 TCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAA 11145
Query 50000 GTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 50059
| ||||| || || || || || ||||| | || | ||| || | ||| || || || |
Sbjct 11144 GCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAG 11085
Query 50060 CAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCAT 50119
|||| || || || ||||| | || || | || ||||||||||| | |||||| | |
Sbjct 11084 CAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGT 11025
Query 50120 AACTGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 50176
| |||| ||| || ||||| | | ||||| ||||| | || | | |
Sbjct 11024 ACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTG 10965
Query 50177 GCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTAT 50236
| || || || |||||||| || | |||| ||| || |||| | || || || |
Sbjct 10964 GAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCT 10905
Query 50237 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 50296
| | ||| ||| ||| | || || ||||| || |||| ||||| || |||||||
Sbjct 10904 CAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGA 10845
Query 50297 AACATCTAGCCTCGGTAATCTGCA-CTTCTGTACAAAATCGTTC--AGCTAAATTTTCAT 50353
| ||| ||||| | | ||| | || ||| | || |||| || || || ||||
Sbjct 10844 ATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCAT 10788
Query 50354 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT 50413
|| | ||| || ||||| || || ||||| || ||| || | | | ||||
Sbjct 10787 CGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT 10728
Query 50414 TGG-GT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 50470
||| || || | || ||||| || || ||| || || | ||| | ||||| | |
Sbjct 10727 TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCCG 10668
Query 50471 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 50530
||||||| || ||||||||||| || ||||| | |||||| || | || || || ||||
Sbjct 10667 TCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGGA 10608
Query 50531 AAATAACAAATCT 50543
| || || |||||
Sbjct 10607 ACATCACGAATCT 10595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718267192873560
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