Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq173 107 2e-18 >seq173 Length=13397 Score = 107 bits (118), Expect = 2e-18 Identities = 282/428 (66%), Gaps = 2/428 (0%) Strand=Plus/Minus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 || || || || |||||||| || || ||| ||| || || || ||||| ||||||||| Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401 Query 13656 GGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATA 13715 ||||| | | | | || || ||||| || || | || ||||| || ||| Sbjct 11400 GGATTCTTGGCGTTGTAGACCTTCTCACATCCGAGAGAGACCAGCAATCTGTCGGCACAG 11341 Query 13716 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13775 || |||| |||| | |||| | ||| || |||||||| | | ||||| | | Sbjct 11340 AAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCG 11281 Query 13776 TTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTC 13834 | | | ||| |||| | | ||| || ||||| | || || | | || || Sbjct 11280 TCTCTCCAGAAACTCTTCT-CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGT 11222 Query 13835 ATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCC 13894 ||| |||||||| || | ||| || | | || || || || || || || Sbjct 11221 CTTACTAGGAGGATGCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACC 11162 Query 13895 CTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttt 13954 |||||| || | ||||| ||||| || ||||| | ||||||||||| |||| || || Sbjct 11161 CTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTT 11102 Query 13955 tAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 ||||| || || | |||||| || ||||| ||||| | ||||| | || ||||| || Sbjct 11101 CAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGC 11042 Query 14015 TATTAATC 14022 | |||| Sbjct 11041 AACCAATC 11034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726926608600