Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq173 105 6e-18 >seq173 Length=13397 Score = 105 bits (116), Expect = 6e-18 Identities = 277/420 (66%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 || || || || || ||||| || || ||| ||| || || || ||||| ||||| ||| Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401 Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503 ||||| | | | | || || ||||| || || | | ||||| || ||| Sbjct 11400 GGATTCTTGGCGTTGTAGACCTTCTCACATCCGAGAGAGACCAGCAATCTGTCGGCACAG 11341 Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563 || |||| |||| | |||| | ||| || |||||||| | | ||||| | | Sbjct 11340 AAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCG 11281 Query 13564 TTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTC 13622 | | | ||| |||| | | ||| || ||||| | || || |||| || ||| Sbjct 11280 TCTCTCCAGAAACTCTTCT-CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGT 11222 Query 13623 ATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCC 13682 ||| |||||||| || | ||| || | | || || || || || || || Sbjct 11221 CTTACTAGGAGGATGCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACC 11162 Query 13683 CTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttt 13742 |||||| || | ||||| ||||| || ||||| | ||||||||||| |||| || || Sbjct 11161 CTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTT 11102 Query 13743 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 ||||| || || | ||| || |||||||| ||||| | ||||| | || ||||| || Sbjct 11101 CAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGC 11042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587729157560