Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq115 271 1e-67 seq173 170 3e-37 seq96 154 2e-32 >seq115 Length=359903 Score = 271 bits (300), Expect = 1e-67 Identities = 604/902 (67%), Gaps = 16/902 (2%) Strand=Plus/Minus Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 |||| || || || | ||| | ||||||||||||| ||||||| ||||| || || | | Sbjct 5850 ACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCA 5791 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 | || ||||||||||||||| | || | || | |||| | ||| | | | |||| Sbjct 5790 TGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCT 5731 Query 71894 TTATTATATTCTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 71951 | | | |||| || | | ||| |||| |||| || || ||| ||||||||| Sbjct 5730 TGACAGT--TCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTC 5673 Query 71952 GTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCC 72011 || || | ||| | | |||||| |||| || | | ||| | ||| || Sbjct 5672 ATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACC 5613 Query 72012 ATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 72071 || || | || || ||||| || ||||||||||||||||||||| || | ||| | Sbjct 5612 ATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACG 5553 Query 72072 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 72131 || |||| ||| || || || ||| | | ||||| ||| | | ||||| | Sbjct 5552 GGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGC 5493 Query 72132 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTAT 72191 |||||| |||||||| || | ||| || | || || || ||||| || || ||||| | Sbjct 5492 ATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGAC 5433 Query 72192 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 72251 ||||| || || | || | || | | ||| ||||| |||||||| || | |||||| Sbjct 5432 ATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATT 5373 Query 72252 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAG----ACCTATTC 72307 ||| || | || || ||| | |||||||| || || |||| ||| || | Sbjct 5372 GGTACCTGCAATGTATGAGCCAGTAGCACGAATGTT----ATGGATATGCATACCGATAC 5317 Query 72308 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATAC 72367 | || || ||||||| ||||| ||||| | || || ||||| ||||| || || || Sbjct 5316 CACCGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGG 5257 Query 72368 TATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCAT 72427 ||||| ||||| || | ||||| |||||| || | | | ||| || |||| Sbjct 5256 AGTCATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCAT 5197 Query 72428 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 72487 | || ||||| || ||||| ||||| || | || ||||| || ||||| | ||||| Sbjct 5196 TGAACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAA 5137 Query 72488 TAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAG 72547 | || ||||| | ||| || || || || |||||||| | | |||||||| Sbjct 5136 GAACTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAG 5077 Query 72548 GTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 72607 |||| || ||| || || ||| | | ||| || || |||||| ||||| |||| Sbjct 5076 GTCTCTCGGCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAAC 5017 Query 72608 CAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 | ||||| ||||| ||||| |||| ||||| | || | || || | | |||||| Sbjct 5016 CGAAATAATTGTAGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTT 4959 Query 72666 AT 72667 || Sbjct 4958 AT 4957 >seq173 Length=13397 Score = 170 bits (188), Expect = 3e-37 Identities = 595/913 (65%), Gaps = 23/913 (3%) Strand=Plus/Minus Query 41750 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 41809 ||| |||| | |||||| || || || || || ||| | || ||||| || || Sbjct 11498 TCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTTC 11440 Query 41810 GTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtt 41869 ||||||||| |||| || || || |||||||||||||| ||||| | | || || | Sbjct 11439 GTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGACC 11380 Query 41870 tttttAAATCCCAATTCAGAA-ATCAATCTATCTGCGATGAATTCTATATATGTTTTCAT 41928 || | | |||| | ||| | |||||| || || ||| || | ||| ||| Sbjct 11379 TTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGCACAGAAGTCAACGTATTCACACAT 11321 Query 41929 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTT 41987 ||| || || ||||| || | | ||| || | || | | ||||| |||| | Sbjct 11320 CATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT- 11262 Query 41988 CAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTT--TCTTCACTCGGTGGATACAA 42045 | ||| ||| || || || || || |||| || | |||| ||| || |||| | Sbjct 11261 CGATATCGACGGCCTCCGTCATGATTC-TCTTGATGATGGTCTT-ACTAGGAGGATGCTT 11204 Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 || ||| || | | || ||||| || ||| ||||||||||| || | || | Sbjct 11203 CAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAAG 11144 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||||| || || || || || ||||| | || | ||| || | ||| || || || || Sbjct 11143 CTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAGC 11084 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT- 42224 ||| ||||| || ||||| | || || | || |||||||||| | |||||| | | Sbjct 11083 AAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGTA 11024 Query 42225 --AACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | || | ||| || ||||| | | ||||| ||||| | || | | || Sbjct 11023 CAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTGG 10964 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 || || || |||||||| || | |||| ||| || |||| | || || || || Sbjct 10963 AATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCTC 10904 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 | ||| ||| ||| | || || ||||| || |||| ||||| || |||||||| Sbjct 10903 AAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGAA 10844 Query 42403 ACATCTGGCCTCGGTAACCTGTA-CTTCTGTACAAAATCGTTC--AGCTAAATTTTCGTT 42459 ||| ||||| | | ||| | || ||| | || |||| || || || || | Sbjct 10843 TGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCATC 10787 Query 42460 CACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 || | ||| || ||||| || || ||||| || ||| || ||| | |||| Sbjct 10786 GACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT- 10728 Query 42520 CGGTGTTAAT----TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCG 42575 || ||| || || ||||| || || ||| || || | ||| | ||||| ||| Sbjct 10727 TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCCG 10668 Query 42576 TCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGA 42635 ||||||| || || |||||||| || ||||| | ||||||||| | || ||||| |||| Sbjct 10667 TCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGGA 10608 Query 42636 AAATAACAAATCT 42648 | || || ||||| Sbjct 10607 ACATCACGAATCT 10595 >seq96 Length=143779 Score = 154 bits (170), Expect = 2e-32 Identities = 388/582 (67%), Gaps = 16/582 (3%) Strand=Plus/Plus Query 71699 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA---TATTGTATAATTT 71755 |||| || | | |||||||||||| || || | | | || | |||| | || | Sbjct 91965 CAACTGAACCTAAATTACAAACGGCAACTTCGT---CCTTGGAAGAGTATTCAACAACCT 92021 Query 71756 CAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TT 71813 || |||||||| | ||||||||||| | ||| ||||| || | ||| | || Sbjct 92022 CACAACAAAGATTGGATGATTTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATT 92079 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 ||| ||||| ||||| |||| || || ||||||||||| ||||||| | |||| Sbjct 92080 ACAGGCATCTTTATAGAGAAGGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTT 92139 Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGT 71933 | |||||| || ||||| || || | |||||||||||| | || || ||| Sbjct 92140 CTCCCAGACCTTTCTTGCCTTGATCTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGT 92199 Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGA-CATTCATTCGGAC 71992 ||||||| | |||| ||| |||||| ||| | ||| ||| || | || | | Sbjct 92200 ATATAATGTATTAAACTTGTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAG 92258 Query 71993 ACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 72052 | | | |||| ||||| || |||| ||||||||| | || |||||||| | Sbjct 92259 AAAATAGACTCCACATGTCATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATA 92318 Query 72053 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 72112 || |||||||| |||| | || || || || ||||||| ||||||| | Sbjct 92319 ACGCATAAAATAGATGCCTGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCA 92378 Query 72113 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC--ATAACTCCCGGCCG 72170 ||| |||| | ||| || ||||| ||||| || ||||| | || | || |||| Sbjct 92379 AGAATTCCATTACATCTGAGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCT 92436 Query 72171 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 72230 ||| ||||| || ||||| | ||| || ||| | |||| || | |||||||| Sbjct 92437 TTTATTTCCCCCTTGATCAACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAAC 92496 Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 ||| ||| | |||| ||||| || || || |||||| |||| Sbjct 92497 AATTCCACTAGATGTGCCATTTGTACCTGAAATATAGGTTCC 92538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137698326040