Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq173 145 1e-29 seq137 105 1e-17 >seq173 Length=13397 Score = 145 bits (160), Expect = 1e-29 Identities = 567/864 (66%), Gaps = 47/864 (5%) Strand=Plus/Plus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || || ||| | |||||||| ||||| |||||||||||||||||| ||||||| ||||| Sbjct 10625 GATATCTGGCAGATGTACAAGAAGGCAGAGGCCTCCTTTTGGACGGCCGAAGAGATCGAT 10684 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA 125135 || || ||||| || || ||| | | || ||| | | ||| || | || ||| Sbjct 10685 CTTTCGAAGGATCTCCCAGACTGGAACAACCGAATGAACGCCAACGAGAGATACTTCATA 10744 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 ||| | ||||||||||| || | ||||||||| | ||| | || || || | | | Sbjct 10745 TCGAGAGTCTTGGCCTTCTTCGCAGCATCCGATGGATTGGTCGATGAGAA-CT-TGGCCC 10802 Query 125196 CGA--TTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAAT 125251 || ||| || | ||| | | | || |||| | || || ||||| ||||| || Sbjct 10803 AGAACTTCATGCAGCAGGTTCAGC-TGCCTGAGG-CAAGAGCATTCTACGGCTTCCAGAT 10860 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 |||| ||||||| | ||||| || | ||||||| | || |||| | ||| | ||| Sbjct 10861 CATGGTTGAGAATATTCACTCCGAGACGTACTCTCTATTGCTTGAGACCTACGTCACCGA 10920 Query 125312 TCCGCAACGTAAAC--ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 | | | | || | || | || || || ||||| || | || |||| || Sbjct 10921 TAAG--AAGGAATCGGACTACTTGTTCAATGCCATCGAGACCATTCCACCTATCAAGGAA 10978 Query 125370 AAGGCTCAATGGGTGATTC-GGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 ||||| | |||| || | | ||||| || || | | | | ||||||||| ||| | Sbjct 10979 AAGGCACTGTGGG-CATACAGATGGATGAATAACAAGGACGCCTTGTACGCCGAGAGATT 11037 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 ||| || || || ||| | ||||| | ||||| || || ||||| | ||||| || Sbjct 11038 GGTTGCCTTTGCAGCCATCGAGGGTGTGTTCTTCTCCGGATCGTTTGCTTCGATCTTCTG 11097 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 | | |||||| | || | ||||| || || || | |||||| |||| | | || Sbjct 11098 GTTGAAGAAGAGAGGTTTGATGCCAGGTCTTACATTCTCGAACGAGCTTATCTGCAGGGA 11157 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTC--CCGA 125605 ||||| |||||| ||||| ||| || || || || | ||| || || || | Sbjct 11158 TGAGGGTCTACACACGGACTTCGCCTGCCTCCTATTCTCAC-ACTTGAAGCATCCTCCTA 11216 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 || ||| ||| | || || || |||| | || || ||||| || | | | Sbjct 11217 GT-AAGA-CCATC-ATCAAGAG--AATCA------TGACGGAGGCCGTCGATATCG-AGA 11264 Query 125666 AGAGTTTCT-AACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 ||||||||| | || | |||| || || | || ||||||||| | | |||| Sbjct 11265 AGAGTTTCTGGAGAGACGCATTACCTGTTTCGTTGTTGGGTATGAACTGCGATATGATGT 11324 Query 125725 GCGAGTACATAGAGTT-TGT---GGCAGA----TCGTCTACTGTACGAGTTGATTGGCCG 125776 | || ||| | || || ||| | |||| | |||| || | || ||| Sbjct 11325 GTGAATACGTTGACTTCTGTGCCGACAGATTGCTGGTCT-CTCTCGGATGTGA------- 11376 Query 125777 CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAA 125836 ||| | ||||||||||||||||| |||||||||||| | ||| || | | || || Sbjct 11377 GAAGGTCTACAACGCCAAGAATCCATTTGATTTCATGGAGAACATTTCGTTGGCAGGAAA 11436 Query 125837 GACCAACTTTTTCGAGAAGAAGGT 125860 ||| ||||| |||||||||| ||| Sbjct 11437 GACGAACTTCTTCGAGAAGAGGGT 11460 >seq137 Length=354847 Score = 105 bits (116), Expect = 1e-17 Identities = 325/489 (66%), Gaps = 24/489 (5%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 || ||||| || || |||| || | | ||||| | || | | || | || ||| | Sbjct 274714 CCCCTGTTAACCACTAAGAAAGTGTATTTCAAGAGTATCTTGTATGAATTATTATGGTTT 274655 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAG--GGTGTACACATTTGGAGCG 70013 || || || || ||||| | |||| | || ||||| ||||| ||||| |||| | Sbjct 274654 ATCTCTGGTTCAACCAACGGTAAAGTGTTGGA--GAAAGAAGGTGTTCACATATGGAAAG 274597 Query 70014 GCAACAGTAGTCGA-AGCGT-TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGA 70071 ||||| || || | || || ||||||||| | || || ||||| || ||| | || Sbjct 274596 GCAACGGT--TCAAGAGAGTATTTGGATTCAATTGGATTGACCGATCGAGAAGTTGATGA 274539 Query 70072 TCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGA 70131 | |||| ||| | ||||||||||| |||||||| | || | | |||| | | ||| | Sbjct 274538 TTTGGGTCCAATATACGGATTCCAATGGAGGCATTTTGGTGCTGAATATGAAAATTGCCA 274479 Query 70132 GACAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACTCTCAAGA 70190 ||||| ||| | ||| | || ||||||| || || || | ||| | || | |||| Sbjct 274478 TACAGATTATACAGGTAAAGGGTTTGATCAGATAGCCAAC-GTTATTCATACCATTAAGA 274420 Query 70191 CCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAA 70250 | | || | ||| | ||| | | | |||||||||| ||| ||| | | | Sbjct 274419 CGGACCCTTATAACAGGCGAATCCTTCTTTCTGCATGGAATCCACCAGCTTTTAAGAAGA 274360 Query 70251 TGGCACTACCACCGTGTCACTGT-TTGGCTCAGTTTTA--CTCG-TACGA---TGGCAA- 70302 ||||||||||||| ||||| ||| || |||||| || | | ||| | ||||| Sbjct 274359 TGGCACTACCACCATGTCA-TGTGTTCTGTCAGTTCTATGTTAGTTACAAGACCGGCAAA 274301 Query 70303 -----ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 |||| || |||||||||||| ||||||||| | ||||| || || Sbjct 274300 CCCAGATTGAACTGTCAAATGTATCAGAGATCATGCGACATGGGATTGGGTGTTCCTTTC 274241 Query 70358 AACATTGCA 70366 ||||||||| Sbjct 274240 AACATTGCA 274232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057541880040