Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq173 145 1e-29
seq137 105 1e-17
>seq173
Length=13397
Score = 145 bits (160), Expect = 1e-29
Identities = 567/864 (66%), Gaps = 47/864 (5%)
Strand=Plus/Plus
Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075
|| || ||| | |||||||| ||||| |||||||||||||||||| ||||||| |||||
Sbjct 10625 GATATCTGGCAGATGTACAAGAAGGCAGAGGCCTCCTTTTGGACGGCCGAAGAGATCGAT 10684
Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA 125135
|| || ||||| || || ||| | | || ||| | | ||| || | || |||
Sbjct 10685 CTTTCGAAGGATCTCCCAGACTGGAACAACCGAATGAACGCCAACGAGAGATACTTCATA 10744
Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195
||| | ||||||||||| || | ||||||||| | ||| | || || || | | |
Sbjct 10745 TCGAGAGTCTTGGCCTTCTTCGCAGCATCCGATGGATTGGTCGATGAGAA-CT-TGGCCC 10802
Query 125196 CGA--TTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAAT 125251
|| ||| || | ||| | | | || |||| | || || ||||| ||||| ||
Sbjct 10803 AGAACTTCATGCAGCAGGTTCAGC-TGCCTGAGG-CAAGAGCATTCTACGGCTTCCAGAT 10860
Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311
|||| ||||||| | ||||| || | ||||||| | || |||| | ||| | |||
Sbjct 10861 CATGGTTGAGAATATTCACTCCGAGACGTACTCTCTATTGCTTGAGACCTACGTCACCGA 10920
Query 125312 TCCGCAACGTAAAC--ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369
| | | | || | || | || || || ||||| || | || |||| ||
Sbjct 10921 TAAG--AAGGAATCGGACTACTTGTTCAATGCCATCGAGACCATTCCACCTATCAAGGAA 10978
Query 125370 AAGGCTCAATGGGTGATTC-GGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428
||||| | |||| || | | ||||| || || | | | | ||||||||| ||| |
Sbjct 10979 AAGGCACTGTGGG-CATACAGATGGATGAATAACAAGGACGCCTTGTACGCCGAGAGATT 11037
Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488
||| || || || ||| | ||||| | ||||| || || ||||| | ||||| ||
Sbjct 11038 GGTTGCCTTTGCAGCCATCGAGGGTGTGTTCTTCTCCGGATCGTTTGCTTCGATCTTCTG 11097
Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548
| | |||||| | || | ||||| || || || | |||||| |||| | | ||
Sbjct 11098 GTTGAAGAAGAGAGGTTTGATGCCAGGTCTTACATTCTCGAACGAGCTTATCTGCAGGGA 11157
Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTC--CCGA 125605
||||| |||||| ||||| ||| || || || || | ||| || || || |
Sbjct 11158 TGAGGGTCTACACACGGACTTCGCCTGCCTCCTATTCTCAC-ACTTGAAGCATCCTCCTA 11216
Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665
|| ||| ||| | || || || |||| | || || ||||| || | | |
Sbjct 11217 GT-AAGA-CCATC-ATCAAGAG--AATCA------TGACGGAGGCCGTCGATATCG-AGA 11264
Query 125666 AGAGTTTCT-AACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724
||||||||| | || | |||| || || | || ||||||||| | | ||||
Sbjct 11265 AGAGTTTCTGGAGAGACGCATTACCTGTTTCGTTGTTGGGTATGAACTGCGATATGATGT 11324
Query 125725 GCGAGTACATAGAGTT-TGT---GGCAGA----TCGTCTACTGTACGAGTTGATTGGCCG 125776
| || ||| | || || ||| | |||| | |||| || | || |||
Sbjct 11325 GTGAATACGTTGACTTCTGTGCCGACAGATTGCTGGTCT-CTCTCGGATGTGA------- 11376
Query 125777 CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAA 125836
||| | ||||||||||||||||| |||||||||||| | ||| || | | || ||
Sbjct 11377 GAAGGTCTACAACGCCAAGAATCCATTTGATTTCATGGAGAACATTTCGTTGGCAGGAAA 11436
Query 125837 GACCAACTTTTTCGAGAAGAAGGT 125860
||| ||||| |||||||||| |||
Sbjct 11437 GACGAACTTCTTCGAGAAGAGGGT 11460
>seq137
Length=354847
Score = 105 bits (116), Expect = 1e-17
Identities = 325/489 (66%), Gaps = 24/489 (5%)
Strand=Plus/Minus
Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955
|| ||||| || || |||| || | | ||||| | || | | || | || ||| |
Sbjct 274714 CCCCTGTTAACCACTAAGAAAGTGTATTTCAAGAGTATCTTGTATGAATTATTATGGTTT 274655
Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAG--GGTGTACACATTTGGAGCG 70013
|| || || || ||||| | |||| | || ||||| ||||| ||||| |||| |
Sbjct 274654 ATCTCTGGTTCAACCAACGGTAAAGTGTTGGA--GAAAGAAGGTGTTCACATATGGAAAG 274597
Query 70014 GCAACAGTAGTCGA-AGCGT-TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGA 70071
||||| || || | || || ||||||||| | || || ||||| || ||| | ||
Sbjct 274596 GCAACGGT--TCAAGAGAGTATTTGGATTCAATTGGATTGACCGATCGAGAAGTTGATGA 274539
Query 70072 TCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGA 70131
| |||| ||| | ||||||||||| |||||||| | || | | |||| | | ||| |
Sbjct 274538 TTTGGGTCCAATATACGGATTCCAATGGAGGCATTTTGGTGCTGAATATGAAAATTGCCA 274479
Query 70132 GACAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACTCTCAAGA 70190
||||| ||| | ||| | || ||||||| || || || | ||| | || | ||||
Sbjct 274478 TACAGATTATACAGGTAAAGGGTTTGATCAGATAGCCAAC-GTTATTCATACCATTAAGA 274420
Query 70191 CCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAA 70250
| | || | ||| | ||| | | | |||||||||| ||| ||| | | |
Sbjct 274419 CGGACCCTTATAACAGGCGAATCCTTCTTTCTGCATGGAATCCACCAGCTTTTAAGAAGA 274360
Query 70251 TGGCACTACCACCGTGTCACTGT-TTGGCTCAGTTTTA--CTCG-TACGA---TGGCAA- 70302
||||||||||||| ||||| ||| || |||||| || | | ||| | |||||
Sbjct 274359 TGGCACTACCACCATGTCA-TGTGTTCTGTCAGTTCTATGTTAGTTACAAGACCGGCAAA 274301
Query 70303 -----ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357
|||| || |||||||||||| ||||||||| | ||||| || ||
Sbjct 274300 CCCAGATTGAACTGTCAAATGTATCAGAGATCATGCGACATGGGATTGGGTGTTCCTTTC 274241
Query 70358 AACATTGCA 70366
|||||||||
Sbjct 274240 AACATTGCA 274232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057541880040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |