Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq110 159 8e-34
seq1 136 9e-27
seq173 122 2e-22
>seq110
Length=92542
Score = 159 bits (176), Expect = 8e-34
Identities = 156/201 (78%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||| ||||||||||| || ||||| |||||||| || ||||| | ||||| |||
Sbjct 52932 GTAGATTCCTTCTGAATATTGTAATCAGAAAGAGTTCTGCCATCTTCCAACTGTTTACCA 52991
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | |||||||||||||| || |||||||| |||||||| |||||| ||
Sbjct 52992 GCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTTTGCTTG 53051
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || || || ||||| | || ||||||||||| ||||| ||
Sbjct 53052 ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATAGTCTTACCTGTAAGGGTC 53111
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || || ||||| |||
Sbjct 53112 TTAACGAAAATTTGCATCTTG 53132
>seq1
Length=504328
Score = 136 bits (150), Expect = 9e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | ||||| || | || | || || || || || || || || |||
Sbjct 435071 ATACCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCA 435130
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||||||||||||||| | || || ||||| ||||| | ||||||||||||||
Sbjct 435131 GAAAGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGT 435190
Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508
|| ||||| || |||||||||||||| ||| || ||||| || | ||| || || ||
Sbjct 435191 GGGATTCCCTCCTTATCCTGAATCTTCTGC-TTGACATTGTCAATGGTGTCAGAAGACTC 435249
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || | ||||| |||||||| || | || || || || || ||||||
Sbjct 435250 GACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATT 435301
>seq173
Length=13397
Score = 122 bits (134), Expect = 2e-22
Identities = 393/597 (66%), Gaps = 20/597 (3%)
Strand=Plus/Plus
Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759
||||| ||||| || || || ||| | | ||||| ||| ||||||||| |||| |
Sbjct 10595 AGATTCGTGATGTTCCCTATTCAGTACGACGATATCTGGCAGATGTACAAGAAGGCAGAG 10654
Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819
|| || |||||||| | ||||| | ||||| || | || | ||| ||||| ||
Sbjct 10655 GCCTCCTTTTGGACGGCCGAAGAGATCGATCTTTCGAAGGATCTCCCAGACTGGAACAAC 10714
Query 268820 TTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGCAGTTAG 268875
|| ||| || || ||| || ||||| | | ||||| | || || ||||
Sbjct 10715 CGAATGAACGCCAACGAGAGATACTTCATATCG-AGAGTCTTGGCCTTCTTCGCAGCATC 10773
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
||||| | || | || || | | |||| ||| || |||| ||| | |||||
Sbjct 10774 CGATGGATTGGTCGATGAGAACTTGGCCCAGAACTTCATGCAGCAGGTTCAGCTGCCTGA 10833
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
|| ||| || ||||| |||||||| | || |||||||| || |||| ||||
Sbjct 10834 GGCAAGAGCATTCTACGGCTTCCAGATCATGGTTGAGAATATTCACTCCGAGACGTACTC 10893
Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT--TC--TT 269051
|||||| | || || || | ||||| || ||| | ||||| || || |
Sbjct 10894 TCTATTGCTTGAGACCTACGTCACCGATAAGAAGGAATCG----GACTACTTGTTCAATG 10949
Query 269052 CTAT-GAGAACTATGGAC-TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109
| || |||| | | || | | ||||| ||| ||||| | |||||| ||
Sbjct 10950 CCATCGAGACCATTCCACCTATCAAGGAAAAGGCACTG--TGGGCATACAGATGGATGAA 11007
Query 269110 CGATAGCG-CGCCTT--ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166
| | | |||||| ||| || || || ||||| ||||| || | || ||| | ||
Sbjct 11008 TAACAAGGACGCCTTGTACGCCGAGAGATTGGTTGCCTTTGCAGCCATCGAGGGTGTGTT 11067
Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226
||| || || || ||||| | ||||| ||||||||||| ||||| | |||||||| |
Sbjct 11068 CTTCTCCGGATCGTTTGCTTCGATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGTCT 11127
Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283
|| ||||| ||||| | || ||||||| || ||| ||||| |||||||| ||
Sbjct 11128 TACATTCTCGAACGAGCTTATCTGCAGGGATGAGGGTCTACACACGGACTTCGCCTG 11184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151395759339732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |