Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq110 159 8e-34 seq1 136 9e-27 seq173 122 2e-22 >seq110 Length=92542 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||||||||| || ||||| |||||||| || ||||| | ||||| ||| Sbjct 52932 GTAGATTCCTTCTGAATATTGTAATCAGAAAGAGTTCTGCCATCTTCCAACTGTTTACCA 52991 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||||||||||| || |||||||| |||||||| |||||| || Sbjct 52992 GCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTTTGCTTG 53051 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || ||||| | || ||||||||||| ||||| || Sbjct 53052 ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATAGTCTTACCTGTAAGGGTC 53111 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || || ||||| ||| Sbjct 53112 TTAACGAAAATTTGCATCTTG 53132 >seq1 Length=504328 Score = 136 bits (150), Expect = 9e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||||| || | || | || || || || || || || || ||| Sbjct 435071 ATACCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCA 435130 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| | || || ||||| ||||| | |||||||||||||| Sbjct 435131 GAAAGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGT 435190 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || ||||| || |||||||||||||| ||| || ||||| || | ||| || || || Sbjct 435191 GGGATTCCCTCCTTATCCTGAATCTTCTGC-TTGACATTGTCAATGGTGTCAGAAGACTC 435249 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | ||||| |||||||| || | || || || || || |||||| Sbjct 435250 GACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATT 435301 >seq173 Length=13397 Score = 122 bits (134), Expect = 2e-22 Identities = 393/597 (66%), Gaps = 20/597 (3%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||| ||||| || || || ||| | | ||||| ||| ||||||||| |||| | Sbjct 10595 AGATTCGTGATGTTCCCTATTCAGTACGACGATATCTGGCAGATGTACAAGAAGGCAGAG 10654 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 || || |||||||| | ||||| | ||||| || | || | ||| ||||| || Sbjct 10655 GCCTCCTTTTGGACGGCCGAAGAGATCGATCTTTCGAAGGATCTCCCAGACTGGAACAAC 10714 Query 268820 TTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGCAGTTAG 268875 || ||| || || ||| || ||||| | | ||||| | || || |||| Sbjct 10715 CGAATGAACGCCAACGAGAGATACTTCATATCG-AGAGTCTTGGCCTTCTTCGCAGCATC 10773 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||| | || | || || | | |||| ||| || |||| ||| | ||||| Sbjct 10774 CGATGGATTGGTCGATGAGAACTTGGCCCAGAACTTCATGCAGCAGGTTCAGCTGCCTGA 10833 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 || ||| || ||||| |||||||| | || |||||||| || |||| |||| Sbjct 10834 GGCAAGAGCATTCTACGGCTTCCAGATCATGGTTGAGAATATTCACTCCGAGACGTACTC 10893 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT--TC--TT 269051 |||||| | || || || | ||||| || ||| | ||||| || || | Sbjct 10894 TCTATTGCTTGAGACCTACGTCACCGATAAGAAGGAATCG----GACTACTTGTTCAATG 10949 Query 269052 CTAT-GAGAACTATGGAC-TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | || |||| | | || | | ||||| ||| ||||| | |||||| || Sbjct 10950 CCATCGAGACCATTCCACCTATCAAGGAAAAGGCACTG--TGGGCATACAGATGGATGAA 11007 Query 269110 CGATAGCG-CGCCTT--ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 | | | |||||| ||| || || || ||||| ||||| || | || ||| | || Sbjct 11008 TAACAAGGACGCCTTGTACGCCGAGAGATTGGTTGCCTTTGCAGCCATCGAGGGTGTGTT 11067 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 ||| || || || ||||| | ||||| ||||||||||| ||||| | |||||||| | Sbjct 11068 CTTCTCCGGATCGTTTGCTTCGATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGTCT 11127 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 || ||||| ||||| | || ||||||| || ||| ||||| |||||||| || Sbjct 11128 TACATTCTCGAACGAGCTTATCTGCAGGGATGAGGGTCTACACACGGACTTCGCCTG 11184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395759339732