Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq92 145 1e-30 seq12 118 2e-22 >seq92 Length=180708 Score = 145 bits (160), Expect = 1e-30 Identities = 199/273 (73%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| | |||| |||| |||||||||| ||||| ||||||||||| || | Sbjct 171725 CGCTAAGCGTCACAGAAAGAT-TCTTAGAGATAACATTCAAGGTATCACCAAGCCTGCAA 171783 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | | |||| | | ||||| |||||| | |||||| ||| |||||||||| Sbjct 171784 TCAGAAGATTGGCAAGAAGAGGTGGTGTCAAGAGAATCTCTGCTTTGATCTATGAAGAAG 171843 Query 16551 TTCGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 || | | ||| ||||| ||| ||| | ||| || ||| |||||| | ||||| Sbjct 171844 TTAGAGCTGTCTTGAA-ATCATTCTTAGAGAATGTCATCAGAGATGCTGTTACTTATACT 171902 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||||||||| || |||||||| || || ||||| | ||||| || ||||| | || Sbjct 171903 GAGCACGCTAAGCGGAAGACTGTTACATCATTGGATGTTGTCTACGCTTTGAAGAGACAG 171962 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | | |||||||| || ||||| || Sbjct 171963 GGCAGAACTTTGTATGGTTTCGGTGGTTAAGCT 171995 >seq12 Length=247580 Score = 118 bits (130), Expect = 2e-22 Identities = 189/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| | | ||| |||| |||||||||| ||||| ||||||||||| || | Sbjct 184010 CGCTAAGCGTCACAGAAAGAT-TCTTAGAGATAACATTCAAGGTATCACCAAGCCTGCAA 184068 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | | |||| | | ||||| |||||| | |||||| | | || || || Sbjct 184069 TCAGAAGATTGGCAAGAAGAGGTGGTGTCAAGAGAATCTCTGCTCTTATATACGAGGAAG 184128 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | | ||| |||||| ||| | ||| || ||| || ||| | ||||||| Sbjct 184129 TGAGAGCTGTCTTGAAGTCATTCTTGGAGAATGTCATCAGGGACGCTGTTACTTATACCG 184188 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| || || ||||| |||| || || |||||| | |||| Sbjct 184189 AGCACGCCAAGCGGAAGACTGTTACATCTTTGGATGTCGTTTACGCTTTGAAAAGACAAG 184248 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||| || ||||| Sbjct 184249 GCAGAACCTTGTACGGTTTCGGTGGTTAA 184277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075036339047