Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq115 297 2e-75
seq173 159 4e-34
seq96 152 6e-32
>seq115
Length=359903
Score = 297 bits (328), Expect = 2e-75
Identities = 608/899 (68%), Gaps = 10/899 (1%)
Strand=Plus/Minus
Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027
|||| ||||| || | ||| | ||||||||||||| ||||||| ||||| || || | |
Sbjct 5850 ACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCA 5791
Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087
|||||||||||||||||||| | || | || | |||| | ||| | | | ||||
Sbjct 5790 TGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCT 5731
Query 63088 TTATTATAGAT-TTGTATCTC--CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACT 63144
| | || | || || | | | ||| |||| ||| || |||||| ||||||||
Sbjct 5730 TGAC---AGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACT 5674
Query 63145 CGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63204
| || || | |||| | | |||||| |||| || | | ||| | ||| |
Sbjct 5673 CATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGAC 5614
Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63264
| | || | ||| || ||||| || ||||||||||||||||||||| || | ||| |
Sbjct 5613 CATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCAC 5554
Query 63265 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63324
|| |||| || || || || ||| | | ||||| ||| | | ||||| |
Sbjct 5553 GGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTG 5494
Query 63325 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63384
|||||| |||||||| || | ||| || | ||||| || ||||| || || ||||| |
Sbjct 5493 CATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGA 5434
Query 63385 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63444
||||| || || | || | || | | ||| ||||| ||||| || || ||||||
Sbjct 5433 CATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCAT 5374
Query 63445 TGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63504
||||||| | || || ||| | |||||||| ||| || | ||| || || |
Sbjct 5373 TGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCAC 5314
Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTAT 63564
| || ||||||| ||||| ||||| | || || || || |||||||| || ||| |
Sbjct 5313 CGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGT 5254
Query 63565 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63624
|||| ||||| || | ||||| |||||| || | | | ||| || ||||| |
Sbjct 5253 CATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGA 5194
Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684
| ||||| || ||||| ||||| || | || ||| | || ||||| | ||||| |
Sbjct 5193 ACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAA 5134
Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744
|| ||||| | ||| || || || || |||||||| | | ||||||||||
Sbjct 5133 CTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTC 5074
Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804
| || ||| || ||| ||| | | ||| || || |||||| ||||| ||||| |
Sbjct 5073 TCTCGGCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGA 5014
Query 63805 AATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 63861
|||| ||||| ||||| |||| ||||| | || | ||||| | | ||||||||
Sbjct 5013 AATAATTGTAGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957
>seq173
Length=13397
Score = 159 bits (176), Expect = 4e-34
Identities = 592/913 (65%), Gaps = 21/913 (2%)
Strand=Plus/Minus
Query 32988 ATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 33047
|||| |||| | |||||| || || || || || ||| | || ||||| || ||
Sbjct 11499 ATCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTT 11441
Query 33048 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAt 33107
|| |||||| |||| || || || |||||||||||||| ||||| | | || || |
Sbjct 11440 CGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGAC 11381
Query 33108 ttttttAAATCCCAATTCAGAA-ATCAATCTATCCGCGACGAATTCTATATATGTTTTCA 33166
|| | | |||| | ||| | |||||| || || ||| || | ||| ||
Sbjct 11380 CTTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGCACAGAAGTCAACGTATTCACACA 11322
Query 33167 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA-AGAAATTCTTGT 33225
|||| || || ||||| || | | ||| || | || | | ||||| |||| |
Sbjct 11321 TCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT 11262
Query 33226 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTT-TCTTCACTCGGTGGATGCAA 33284
| || || || || || || || | | | | |||| ||| || ||||||
Sbjct 11261 -CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGTCTT-ACTAGGAGGATGCTT 11204
Query 33285 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 33344
|| ||| || | | || ||||| || ||| |||||||| || || | || ||
Sbjct 11203 CAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAAG 11144
Query 33345 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33404
||||| || || || || || ||||| | || | ||| || | ||| || || |||||
Sbjct 11143 CTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAGC 11084
Query 33405 GAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA 33464
|| ||||| || ||||| | || || | || |||||||||| | |||||| | ||
Sbjct 11083 AAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGTA 11024
Query 33465 ACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521
|||| ||| || ||||| | | ||||| ||||| | || | | ||
Sbjct 11023 CAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTGG 10964
Query 33522 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33581
|| || || |||||||| || | |||| ||| || |||| | || || || ||
Sbjct 10963 AATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCTC 10904
Query 33582 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641
| ||| ||| ||| | || || ||||| || |||| ||||| || ||||||||
Sbjct 10903 AAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGAA 10844
Query 33642 ACATCTAGCCTCGGTAATCTGTACTT-CTGTACAAAATCGTTCCG--CCAAATTTTCATT 33698
||| ||||| | | ||| || | ||| | || |||| | |||| || ||||
Sbjct 10843 TGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCATC 10787
Query 33699 CACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 33758
|| | ||| || ||||| || || ||||| || ||| || ||| | ||||
Sbjct 10786 GACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT- 10728
Query 33759 TGGTGTTAGTT----TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 33814
||| ||| || | ||||| || || ||| || || | ||| | ||||| | |
Sbjct 10727 TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCCG 10668
Query 33815 TCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGA 33874
||||||| || ||||||||||| || ||||| | |||||| || | || || || ||||
Sbjct 10667 TCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGGA 10608
Query 33875 AAATAACAAATCT 33887
| || || |||||
Sbjct 10607 ACATCACGAATCT 10595
>seq96
Length=143779
Score = 152 bits (168), Expect = 6e-32
Identities = 354/525 (67%), Gaps = 14/525 (3%)
Strand=Plus/Plus
Query 62970 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 63027
||||| ||||| | ||| ||||| || | ||| | ||||| ||||| ||||| ||||
Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099
Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087
||| || ||||||||||| ||||||| | |||| | |||||| || ||||
Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159
Query 63088 TTATTATAGATTTG--TATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63145
| || | |||| |||||| ||||| | || || |||||| ||| | ||||
Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217
Query 63146 GTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAACGACCACTCTC 63204
||| |||||||||| | ||| ||| || | |||| | | | | ||||
Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGT 92276
Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63264
| ||| || |||| ||||||||| | || |||||||| | || |||||||| |
Sbjct 92277 CATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCC 92336
Query 63265 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63324
||| | ||| || || || ||||||| ||||||| | ||| |||| | ||| |
Sbjct 92337 TGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTG 92396
Query 63325 AATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63382
| ||||| ||||| || ||||| | || | || |||| ||| ||||| || |||||
Sbjct 92397 AGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454
Query 63383 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63442
| ||| || ||| | |||| || | |||||||| ||| || | ||| | ||
Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514
Query 63443 ATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487
||| ||||| || |||||| |||| || | | |||||||||
Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622945806155640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |