Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq115 297 2e-75 seq173 159 4e-34 seq96 152 6e-32 >seq115 Length=359903 Score = 297 bits (328), Expect = 2e-75 Identities = 608/899 (68%), Gaps = 10/899 (1%) Strand=Plus/Minus Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 |||| ||||| || | ||| | ||||||||||||| ||||||| ||||| || || | | Sbjct 5850 ACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCA 5791 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087 |||||||||||||||||||| | || | || | |||| | ||| | | | |||| Sbjct 5790 TGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCT 5731 Query 63088 TTATTATAGAT-TTGTATCTC--CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACT 63144 | | || | || || | | | ||| |||| ||| || |||||| |||||||| Sbjct 5730 TGAC---AGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACT 5674 Query 63145 CGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63204 | || || | |||| | | |||||| |||| || | | ||| | ||| | Sbjct 5673 CATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGAC 5614 Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63264 | | || | ||| || ||||| || ||||||||||||||||||||| || | ||| | Sbjct 5613 CATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCAC 5554 Query 63265 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63324 || |||| || || || || ||| | | ||||| ||| | | ||||| | Sbjct 5553 GGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTG 5494 Query 63325 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63384 |||||| |||||||| || | ||| || | ||||| || ||||| || || ||||| | Sbjct 5493 CATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGA 5434 Query 63385 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63444 ||||| || || | || | || | | ||| ||||| ||||| || || |||||| Sbjct 5433 CATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCAT 5374 Query 63445 TGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63504 ||||||| | || || ||| | |||||||| ||| || | ||| || || | Sbjct 5373 TGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCAC 5314 Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTAT 63564 | || ||||||| ||||| ||||| | || || || || |||||||| || ||| | Sbjct 5313 CGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGT 5254 Query 63565 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63624 |||| ||||| || | ||||| |||||| || | | | ||| || ||||| | Sbjct 5253 CATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGA 5194 Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684 | ||||| || ||||| ||||| || | || ||| | || ||||| | ||||| | Sbjct 5193 ACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAA 5134 Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744 || ||||| | ||| || || || || |||||||| | | |||||||||| Sbjct 5133 CTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTC 5074 Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804 | || ||| || ||| ||| | | ||| || || |||||| ||||| ||||| | Sbjct 5073 TCTCGGCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGA 5014 Query 63805 AATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 63861 |||| ||||| ||||| |||| ||||| | || | ||||| | | |||||||| Sbjct 5013 AATAATTGTAGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957 >seq173 Length=13397 Score = 159 bits (176), Expect = 4e-34 Identities = 592/913 (65%), Gaps = 21/913 (2%) Strand=Plus/Minus Query 32988 ATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 33047 |||| |||| | |||||| || || || || || ||| | || ||||| || || Sbjct 11499 ATCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTT 11441 Query 33048 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAt 33107 || |||||| |||| || || || |||||||||||||| ||||| | | || || | Sbjct 11440 CGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGAC 11381 Query 33108 ttttttAAATCCCAATTCAGAA-ATCAATCTATCCGCGACGAATTCTATATATGTTTTCA 33166 || | | |||| | ||| | |||||| || || ||| || | ||| || Sbjct 11380 CTTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGCACAGAAGTCAACGTATTCACACA 11322 Query 33167 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA-AGAAATTCTTGT 33225 |||| || || ||||| || | | ||| || | || | | ||||| |||| | Sbjct 11321 TCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT 11262 Query 33226 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTT-TCTTCACTCGGTGGATGCAA 33284 | || || || || || || || | | | | |||| ||| || |||||| Sbjct 11261 -CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGTCTT-ACTAGGAGGATGCTT 11204 Query 33285 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 33344 || ||| || | | || ||||| || ||| |||||||| || || | || || Sbjct 11203 CAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAAG 11144 Query 33345 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33404 ||||| || || || || || ||||| | || | ||| || | ||| || || ||||| Sbjct 11143 CTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAGC 11084 Query 33405 GAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA 33464 || ||||| || ||||| | || || | || |||||||||| | |||||| | || Sbjct 11083 AAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGTA 11024 Query 33465 ACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 |||| ||| || ||||| | | ||||| ||||| | || | | || Sbjct 11023 CAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTGG 10964 Query 33522 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33581 || || || |||||||| || | |||| ||| || |||| | || || || || Sbjct 10963 AATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCTC 10904 Query 33582 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 | ||| ||| ||| | || || ||||| || |||| ||||| || |||||||| Sbjct 10903 AAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGAA 10844 Query 33642 ACATCTAGCCTCGGTAATCTGTACTT-CTGTACAAAATCGTTCCG--CCAAATTTTCATT 33698 ||| ||||| | | ||| || | ||| | || |||| | |||| || |||| Sbjct 10843 TGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCATC 10787 Query 33699 CACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 33758 || | ||| || ||||| || || ||||| || ||| || ||| | |||| Sbjct 10786 GACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT- 10728 Query 33759 TGGTGTTAGTT----TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 33814 ||| ||| || | ||||| || || ||| || || | ||| | ||||| | | Sbjct 10727 TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCCG 10668 Query 33815 TCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGA 33874 ||||||| || ||||||||||| || ||||| | |||||| || | || || || |||| Sbjct 10667 TCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGGA 10608 Query 33875 AAATAACAAATCT 33887 | || || ||||| Sbjct 10607 ACATCACGAATCT 10595 >seq96 Length=143779 Score = 152 bits (168), Expect = 6e-32 Identities = 354/525 (67%), Gaps = 14/525 (3%) Strand=Plus/Plus Query 62970 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 63027 ||||| ||||| | ||| ||||| || | ||| | ||||| ||||| ||||| |||| Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087 ||| || ||||||||||| ||||||| | |||| | |||||| || |||| Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159 Query 63088 TTATTATAGATTTG--TATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63145 | || | |||| |||||| ||||| | || || |||||| ||| | |||| Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217 Query 63146 GTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAACGACCACTCTC 63204 ||| |||||||||| | ||| ||| || | |||| | | | | |||| Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGT 92276 Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63264 | ||| || |||| ||||||||| | || |||||||| | || |||||||| | Sbjct 92277 CATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCC 92336 Query 63265 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63324 ||| | ||| || || || ||||||| ||||||| | ||| |||| | ||| | Sbjct 92337 TGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTG 92396 Query 63325 AATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63382 | ||||| ||||| || ||||| | || | || |||| ||| ||||| || ||||| Sbjct 92397 AGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454 Query 63383 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63442 | ||| || ||| | |||| || | |||||||| ||| || | ||| | || Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514 Query 63443 ATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487 ||| ||||| || |||||| |||| || | | ||||||||| Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945806155640