Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq110 111 1e-19 >seq1 Length=504328 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || || || || || | |||||| | ||||||||| | Sbjct 435301 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTC 435242 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | ||||| || |||||| || || || || || || || ||||| Sbjct 435241 TGACACCATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAGGGAATCCCACCTGATCA 435182 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||| |||||| || || ||||| | ||||| | |||| | ||||| || Sbjct 435181 ACAGAGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGATTACAA 435122 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| || || || |||| || || | ||||||||||| || Sbjct 435121 CATCCAAAAGGAGTCCACTCTTCACTTGGTTCTTAGATTGAGAGGTGG 435074 >seq110 Length=92542 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || || || | || || || | || ||| | || |||||| | Sbjct 53132 CAAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACTATCACCTTGGAGGTCGAGTC 53073 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| ||||| | ||||| |||||||| || || ||||| || || || || Sbjct 53072 TTCGGACACGATCGACAATGTCAAGCAAAAGATCCAGGATAAGGAAGGAATTCCACCTGA 53013 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||||||| |||| | | || || || | ||||||| ||||| | ||||| Sbjct 53012 TCAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACTCTTTCTGATTA 52953 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || |||||||| |||| || || || ||||||||||| || Sbjct 52952 CAATATTCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGG 52902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935062067745