Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq115 291 1e-73
seq96 176 6e-39
seq173 161 1e-34
>seq115
Length=359903
Score = 291 bits (322), Expect = 1e-73
Identities = 607/899 (68%), Gaps = 10/899 (1%)
Strand=Plus/Minus
Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882
|||| || || || | ||| | ||||||||||||| ||||||| ||||| || || | |
Sbjct 5850 ACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCA 5791
Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942
|||||||||||||||||||| | || | || | |||| | ||| | | | ||||
Sbjct 5790 TGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCT 5731
Query 62943 TTATTATAGAT-TTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACT 62999
| | || | || || | | ||| |||| ||| || |||||| ||||||||
Sbjct 5730 TGAC---AGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACT 5674
Query 63000 CGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63059
| || || | |||| | || |||||| |||| || | | ||| | ||| |
Sbjct 5673 CATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGAC 5614
Query 63060 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63119
| | || | ||| || ||||| || ||||||||||||||||||||| || | ||| |
Sbjct 5613 CATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCAC 5554
Query 63120 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63179
|| |||| || || || || ||| | | ||||| ||| | | ||||| |
Sbjct 5553 GGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTG 5494
Query 63180 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63239
|||||| |||||||| || | ||| || | ||||| || ||||| || || ||||| |
Sbjct 5493 CATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGA 5434
Query 63240 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 63299
||||| || || | || | || | | ||| ||||| |||||||| || |||||||
Sbjct 5433 CATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCAT 5374
Query 63300 TGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63359
|||| |||| || || ||| | |||||||| ||| || | ||| || || |
Sbjct 5373 TGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCAC 5314
Query 63360 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 63419
| || ||||||| ||||| ||||| | || || ||||| ||||| || || || |
Sbjct 5313 CGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGT 5254
Query 63420 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63479
|||| ||||| || | ||||| |||||| || | | | ||| || ||||| |
Sbjct 5253 CATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGA 5194
Query 63480 ATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539
| ||||| || ||||| || || || | || ||| | || ||||| | ||||| |
Sbjct 5193 ACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAA 5134
Query 63540 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63599
|| ||||| | ||| || || || || |||||||| | | ||||||||||
Sbjct 5133 CTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTC 5074
Query 63600 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63659
| || ||| || ||| ||| | | ||| || || |||||| ||||| ||||| |
Sbjct 5073 TCTCGGCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGA 5014
Query 63660 AATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 63716
|||| ||||| ||||| |||| ||||| | || | ||||| | | ||||||||
Sbjct 5013 AATAATTGTAGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957
>seq96
Length=143779
Score = 176 bits (194), Expect = 6e-39
Identities = 359/525 (68%), Gaps = 14/525 (3%)
Strand=Plus/Plus
Query 62825 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 62882
||||||||||| | ||| ||||| || | ||| | ||||| ||||| ||||| ||||
Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099
Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942
||| || ||||||||||| ||||||| | |||| | |||||| || ||||
Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159
Query 62943 TTATTATAGATTTG--TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63000
| || | |||| |||||||||||| | || || |||||| ||| | ||||
Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217
Query 63001 GTCTCCCCAAACATTGTCCAGTCCAGGA-CATTCATCCGGACACATCAACGACCACTCTC 63059
||| |||||||||| ||||| ||| || | |||| | | | | ||||
Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGT 92276
Query 63060 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63119
| ||| || |||| ||||||||| | || |||||||| | || |||||||| |
Sbjct 92277 CATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCC 92336
Query 63120 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63179
||| | ||| || || || ||||||| ||||||| | ||| |||| | ||| |
Sbjct 92337 TGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTG 92396
Query 63180 AATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63237
| ||||| ||||| || ||||| | || | || |||| ||| ||||| || |||||
Sbjct 92397 AGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454
Query 63238 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 63297
| ||| || ||| | |||| || | |||||||| ||| ||| | ||||| ||
Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514
Query 63298 ATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63342
||| || ||||| |||||| |||| || | | |||||||||
Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559
>seq173
Length=13397
Score = 161 bits (178), Expect = 1e-34
Identities = 595/914 (65%), Gaps = 25/914 (3%)
Strand=Plus/Minus
Query 32346 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 32405
||| |||| | |||||| || || || || || ||| | || ||||| || ||
Sbjct 11498 TCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTTC 11440
Query 32406 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtt 32465
|| || ||| | || || || || ||||||||||| |||||||| | | || || |
Sbjct 11439 GTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGACC 11380
Query 32466 tttttAAATCCCAATTCAGAA-ATCAATCTATCTGCGACA-AATTCTATATATGTTTTCA 32523
|| | | |||| | ||| | |||||| || || ||| || || | ||| ||
Sbjct 11379 TTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGC-ACAGAAGTCAACGTATTCACACA 11322
Query 32524 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGT 32582
|||| || || ||||| || | | ||| || | || | | ||||| |||| |
Sbjct 11321 TCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT 11262
Query 32583 TCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTT--TCTTCACTCGGTGGATACA 32640
| ||| ||| || || || || || |||| || | |||| ||| || |||| |
Sbjct 11261 -CGATATCGACGGCCTCCGTCATGATTC-TCTTGATGATGGTCTT-ACTAGGAGGATGCT 11205
Query 32641 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 32700
|| ||| || | | || ||||| || |||||||||||| || || | || |
Sbjct 11204 TCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAA 11145
Query 32701 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 32760
||||| || || || || || ||||| | || | ||| || | ||| || || || |
Sbjct 11144 GCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAG 11085
Query 32761 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 32820
|||| ||||| || ||||| | || || | || |||||||||| | |||||| | |
Sbjct 11084 CAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGT 11025
Query 32821 AACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 32877
| |||| ||| || ||||| | | ||||| ||||| | || | | |
Sbjct 11024 ACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTG 10965
Query 32878 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 32937
| || ||||| || ||||| || | |||| ||| || |||| | || || || |
Sbjct 10964 GAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCT 10905
Query 32938 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 32997
||| ||| ||| ||| | || || ||||| || |||| || || || |||||||
Sbjct 10904 CAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGA 10845
Query 32998 AGCATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAATCGTTCT--GCTAAATTTTCAT 33054
| ||| ||||| | | ||| | || ||| | || ||||| || || || ||||
Sbjct 10844 ATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCAT 10788
Query 33055 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 33114
|| | ||| || ||||| || || ||||| || ||| || ||| | ||||
Sbjct 10787 CGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT 10728
Query 33115 CTGGTG----TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 33170
||| | || | || ||||| || || ||| || || | ||| | ||||| |
Sbjct 10727 -TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCC 10669
Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 33230
|||||||| || ||||||||||| || ||||| | |||||| || | || ||||| ||
Sbjct 10668 GTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGG 10609
Query 33231 AAAATAACAAATCT 33244
|| || || |||||
Sbjct 10608 AACATCACGAATCT 10595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633630582248400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |