Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq115 291 1e-73 seq96 176 6e-39 seq173 161 1e-34 >seq115 Length=359903 Score = 291 bits (322), Expect = 1e-73 Identities = 607/899 (68%), Gaps = 10/899 (1%) Strand=Plus/Minus Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882 |||| || || || | ||| | ||||||||||||| ||||||| ||||| || || | | Sbjct 5850 ACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCA 5791 Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942 |||||||||||||||||||| | || | || | |||| | ||| | | | |||| Sbjct 5790 TGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCT 5731 Query 62943 TTATTATAGAT-TTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACT 62999 | | || | || || | | ||| |||| ||| || |||||| |||||||| Sbjct 5730 TGAC---AGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACT 5674 Query 63000 CGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63059 | || || | |||| | || |||||| |||| || | | ||| | ||| | Sbjct 5673 CATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGAC 5614 Query 63060 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63119 | | || | ||| || ||||| || ||||||||||||||||||||| || | ||| | Sbjct 5613 CATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCAC 5554 Query 63120 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63179 || |||| || || || || ||| | | ||||| ||| | | ||||| | Sbjct 5553 GGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTG 5494 Query 63180 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63239 |||||| |||||||| || | ||| || | ||||| || ||||| || || ||||| | Sbjct 5493 CATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGA 5434 Query 63240 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 63299 ||||| || || | || | || | | ||| ||||| |||||||| || ||||||| Sbjct 5433 CATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCAT 5374 Query 63300 TGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63359 |||| |||| || || ||| | |||||||| ||| || | ||| || || | Sbjct 5373 TGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCAC 5314 Query 63360 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 63419 | || ||||||| ||||| ||||| | || || ||||| ||||| || || || | Sbjct 5313 CGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGT 5254 Query 63420 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63479 |||| ||||| || | ||||| |||||| || | | | ||| || ||||| | Sbjct 5253 CATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGA 5194 Query 63480 ATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539 | ||||| || ||||| || || || | || ||| | || ||||| | ||||| | Sbjct 5193 ACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAA 5134 Query 63540 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63599 || ||||| | ||| || || || || |||||||| | | |||||||||| Sbjct 5133 CTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTC 5074 Query 63600 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63659 | || ||| || ||| ||| | | ||| || || |||||| ||||| ||||| | Sbjct 5073 TCTCGGCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGA 5014 Query 63660 AATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 63716 |||| ||||| ||||| |||| ||||| | || | ||||| | | |||||||| Sbjct 5013 AATAATTGTAGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTAT 4957 >seq96 Length=143779 Score = 176 bits (194), Expect = 6e-39 Identities = 359/525 (68%), Gaps = 14/525 (3%) Strand=Plus/Plus Query 62825 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG--TTACACGCATCCTTATAAAGAA 62882 ||||||||||| | ||| ||||| || | ||| | ||||| ||||| ||||| |||| Sbjct 92042 TTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAGAA 92099 Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942 ||| || ||||||||||| ||||||| | |||| | |||||| || |||| Sbjct 92100 GGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGCCT 92159 Query 62943 TTATTATAGATTTG--TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63000 | || | |||| |||||||||||| | || || |||||| ||| | |||| Sbjct 92160 TGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAACTT 92217 Query 63001 GTCTCCCCAAACATTGTCCAGTCCAGGA-CATTCATCCGGACACATCAACGACCACTCTC 63059 ||| |||||||||| ||||| ||| || | |||| | | | | |||| Sbjct 92218 GTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACATGT 92276 Query 63060 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63119 | ||| || |||| ||||||||| | || |||||||| | || |||||||| | Sbjct 92277 CATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCC 92336 Query 63120 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63179 ||| | ||| || || || ||||||| ||||||| | ||| |||| | ||| | Sbjct 92337 TGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTG 92396 Query 63180 AATGCCACGGTTCCAAGTATATGGCC--ATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63237 | ||||| ||||| || ||||| | || | || |||| ||| ||||| || ||||| Sbjct 92397 AGTGCCATGGTTCTAA--ATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454 Query 63238 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 63297 | ||| || ||| | |||| || | |||||||| ||| ||| | ||||| || Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514 Query 63298 ATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63342 ||| || ||||| |||||| |||| || | | ||||||||| Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559 >seq173 Length=13397 Score = 161 bits (178), Expect = 1e-34 Identities = 595/914 (65%), Gaps = 25/914 (3%) Strand=Plus/Minus Query 32346 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 32405 ||| |||| | |||||| || || || || || ||| | || ||||| || || Sbjct 11498 TCTCCTTG-GCCATAACACCGGCCTTCTGATAATCGGACACCCTCTTCTCGAAGAAGTTC 11440 Query 32406 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtt 32465 || || ||| | || || || || ||||||||||| |||||||| | | || || | Sbjct 11439 GTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTCTTGGCGTTGTAGACC 11380 Query 32466 tttttAAATCCCAATTCAGAA-ATCAATCTATCTGCGACA-AATTCTATATATGTTTTCA 32523 || | | |||| | ||| | |||||| || || ||| || || | ||| || Sbjct 11379 TTCTCACATCCGAGAG-AGACCAGCAATCTGTCGGC-ACAGAAGTCAACGTATTCACACA 11322 Query 32524 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGT 32582 |||| || || ||||| || | | ||| || | || | | ||||| |||| | Sbjct 11321 TCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTCCAGAAACTCTTCT 11262 Query 32583 TCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTT--TCTTCACTCGGTGGATACA 32640 | ||| ||| || || || || || |||| || | |||| ||| || |||| | Sbjct 11261 -CGATATCGACGGCCTCCGTCATGATTC-TCTTGATGATGGTCTT-ACTAGGAGGATGCT 11205 Query 32641 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 32700 || ||| || | | || ||||| || |||||||||||| || || | || | Sbjct 11204 TCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAA 11145 Query 32701 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 32760 ||||| || || || || || ||||| | || | ||| || | ||| || || || | Sbjct 11144 GCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAG 11085 Query 32761 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 32820 |||| ||||| || ||||| | || || | || |||||||||| | |||||| | | Sbjct 11084 CAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAATCTCTCGGCGT 11025 Query 32821 AACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 32877 | |||| ||| || ||||| | | ||||| ||||| | || | | | Sbjct 11024 ACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTCCTTGATAGGTG 10965 Query 32878 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 32937 | || ||||| || ||||| || | |||| ||| || |||| | || || || | Sbjct 10964 GAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGTGACGTAGGTCT 10905 Query 32938 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 32997 ||| ||| ||| ||| | || || ||||| || |||| || || || ||||||| Sbjct 10904 CAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTGGAAGCCGTAGA 10845 Query 32998 AGCATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAATCGTTCT--GCTAAATTTTCAT 33054 | ||| ||||| | | ||| | || ||| | || ||||| || || || |||| Sbjct 10844 ATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAA---GTTCTGGGCCAAGTTCTCAT 10788 Query 33055 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 33114 || | ||| || ||||| || || ||||| || ||| || ||| | |||| Sbjct 10787 CGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTCTCGATATGAAGTATCTCTCGT 10728 Query 33115 CTGGTG----TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 33170 ||| | || | || ||||| || || ||| || || | ||| | ||||| | Sbjct 10727 -TGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATCTCTTCGGCC 10669 Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 33230 |||||||| || ||||||||||| || ||||| | |||||| || | || ||||| || Sbjct 10668 GTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTACTGAATAGGG 10609 Query 33231 AAAATAACAAATCT 33244 || || || ||||| Sbjct 10608 AACATCACGAATCT 10595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630582248400