Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq173 140 4e-28 >seq173 Length=13397 Score = 140 bits (154), Expect = 4e-28 Identities = 563/871 (65%), Gaps = 33/871 (4%) Strand=Plus/Minus Query 92824 TTTTCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCACTA-GTGAT----TGGA 92878 || || ||||| || ||||||||| |||| || || ||| | | | || |||| Sbjct 11454 TTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATG---TTCTCCATGAAATCAAATGGA 11398 Query 92879 TTCTTGGCGTTATAATACTTTTCACCGATC--AACTCGTACAATAATCTATCAGCTACA- 92935 ||||||||||| || ||| |||| ||| | | || ||||| || || ||| Sbjct 11397 TTCTTGGCGTTGTAGACCTTCTCAC--ATCCGAGAGAGACCAGCAATCTGTCGGC-ACAG 11341 Query 92936 AATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTA-CAGGTAGAGC 92994 || || | ||| | | |||||| ||| || ||||| || | | ||| | |||||| || Sbjct 11340 AAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACA-ACGAAACAGGTAATGC 11282 Query 92995 GTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATT-TCT--ATTAC--T 93049 ||| || ||||| |||||||| | ||||| || ||| |||| ||| || | | Sbjct 11281 GTCTCTCCAGAAACTCTTCTCGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGT 11222 Query 93050 CT-ACTATTTGG-TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTAT 93107 || |||| || || || || || | | | | ||| || ||||| || | Sbjct 11221 CTTACTAGGAGGATGCTTCAAGTGTGAGA-------ATAGGAGGCAGGCGAAGTCCGTGT 11169 Query 93108 GTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTC 93167 ||| ||| || || | | || | ||| || |||||| | |||||| | || |||| Sbjct 11168 GTAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTC 11109 Query 93168 GTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTG 93227 ||||| | ||| || || |||||||| || || || || | ||| || | ||||| Sbjct 11108 TCTTCTTCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGCTG 11049 Query 93228 CAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCC 93287 |||| || || | | ||||| | ||| || | | |||||| | | |||| Sbjct 11048 CAAAGGCAACCAATCTCTCGGCGTACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCC 10989 Query 93288 AATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347 | || |||| ||| ||| || | || ||||| || || || | ||| || | Sbjct 10988 ACAGTGCCTTTTCCTTGATAGGTGGAATGGTCTCGATGGCATTGAACAAGTAGTCCGATT 10929 Query 93348 CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCT 93407 | | | ||| | ||| || || | || ||||| ||| | || || || | ||||| Sbjct 10928 CCTTCTTATCGGTGACGTAGGTCTCAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCT 10869 Query 93408 CCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAA 93467 | | || ||||| |||||||| ||| || || | | ||| || | || | Sbjct 10868 CAACCATGATCTGGAAGCCGTAGAATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGA 10809 Query 93468 ATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATAT 93527 | ||| | | || |||| ||| | |||||||||||||| || || ||||| | Sbjct 10808 AGTTCTGGGCCAAGTTCTCATCGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGACTC 10749 Query 93528 GCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGATAGATCTTTTG 93584 | ||| || | | |||| | | || | | || | ||| || | ||||| || | Sbjct 10748 TCGATATGAAGTATCTCTCGTTGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCG 10689 Query 93585 AAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATA 93644 ||||||||| |||||| | |||||||| || || ||||| || |||||||| | ||| | Sbjct 10688 AAAGATCGATCTCTTCGGCCGTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGA 10629 Query 93645 TGTCTTGATATTGAATTGGAAATATGACAAA 93675 | || | || ||||| || || || || || Sbjct 10628 TATCGTCGTACTGAATAGGGAACATCACGAA 10598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859554023960