Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq173 201 2e-46 >seq173 Length=13397 Score = 201 bits (222), Expect = 2e-46 Identities = 491/731 (67%), Gaps = 21/731 (3%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 ||||||||||||| || || || || | ||| |||||||| ||||| | |||||| Sbjct 10755 TGGCCTTCTTCGCAGCATCCGATGGATTGGTCGATGAGAACTTGGCCCAGAACTTCATGC 10814 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 | |||| ||| |||||| | ||||||||||||||||| | ||||| Sbjct 10815 AGCAGGTTCAGCTGCCTGAGGCAAGAGCATTCTACGGCTTCCAGATCATGGTTGAGAATA 10874 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| |||| | | |||| | || ||| || ||| || | | Sbjct 10875 TTCACTCCGAGACGTACTCTCTATTGCTTGAGACCTACGTCACCGATAA----GAAGGAA 10930 Query 42604 ACGGGCT----GTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 ||| || |||||| ||||| ||||| || || |||||| | ||||| ||| Sbjct 10931 TCGGACTACTTGTTCAATGCCATCGAGACCATTCCACCTATCAAGGAAAAGGCACTGTGG 10990 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || || ||||| | | ||||| || || |||||| |||| |||||| | Sbjct 10991 GCATACAGATGGATGAATAACAAGGACGCCTTGTACGCCGAGAGATTGGTTGCCTTTGCA 11050 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-A 42778 ||| ||||||| | |||||||| || | || || || ||||||||| | ||| ||| | Sbjct 11051 GCCATCGAGGGTGTGTTCTTCTCCGGATCGTTTGCTTCGATCTTCTGGTTGAAGAAGAGA 11110 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 ||| | |||||| || || || ||||||||||| || ||| ||||||| ||||| || || Sbjct 11111 GGTTT-GATGCCAGGTCTTACATTCTCGAACGAGCTTATCTGCAGGGATGAGGGTCTACA 11169 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC- 42897 | |||||| ||||||||||| ||||| ||| | | ||| ||| | | || | Sbjct 11170 CACGGACTTCGCCTGCCTCCTATTCTC---ACACTTGAAGCA-TCCTCCTAGTAAGACCA 11225 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 || | ||||| ||||||||||| || |||||||| ||||| || | || ||| Sbjct 11226 TCATCAAGAGAATCATGACGGAGGCCGTCGATATCGAGAA-GAGTTTCTGGAG-AGACGC 11283 Query 42958 --TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGT 43015 | || || || || | || |||||| ||| | ||||| | ||| | | | | Sbjct 11284 ATTACCTGTTTCGTTGTTGGGTATGAACTGCGATATGATGTGTGAATACGTTGACTTCTG 11343 Query 43016 CGCCGAC-CATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCT 43074 |||||| || | || | || | | || | |||||||| | | || | Sbjct 11344 TGCCGACAGATTGCTGGTCTCTCTCGGATGTGAGAAG-GTCTACAACGCCAAGAATCCAT 11402 Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134 | || || ||||||||||| ||||||| || ||||| ||||| ||||||||| | || Sbjct 11403 TTGATTTCATGGAGAACATTTCGTTGGCAGGAAAGACGAACTTCTTCGAGAAGAGGGTGT 11462 Query 43135 CCGACTACCAG 43145 |||| || ||| Sbjct 11463 CCGATTATCAG 11473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337087041040