Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq115 226 3e-54
seq173 91.5 2e-13
seq116 87.8 2e-12
>seq115
Length=359903
Score = 226 bits (250), Expect = 3e-54
Identities = 1084/1691 (64%), Gaps = 53/1691 (3%)
Strand=Plus/Minus
Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624
||||||| |||| | || |||| || || | ||||||||| || ||||| || |
Sbjct 6837 TGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGAC 6778
Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCA--T 113682
||| |||||| |||| | ||||| || | |||||| | ||||| || || |
Sbjct 6777 CCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAAT 6718
Query 113683 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAAT 113742
||| | ||||| || |||||| |||| | || | || || |||||||||||
Sbjct 6717 GAATA--TTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCATATCAAT 6660
Query 113743 CACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTT-AATATCATCTGGGA 113801
||| ||| ||| ||||| || || | || | ||||| ||| || ||||| |
Sbjct 6659 GACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTC-TCTGGCA 6601
Query 113802 TATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTG 113861
|| | || ||||| || ||| |||| | || | |||||||| | ||
Sbjct 6600 CATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGCATTAC 6541
Query 113862 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 113921
||||| ||| || | ||| |||| || | || ||| |||| |||||||
Sbjct 6540 TCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAACTCAC 6481
Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981
| || | | ||| ||||||| |||| ||| ||||||| || || || |||| ||
Sbjct 6480 CGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTTGTAAC 6421
Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTACGGAGA 114040
||| || || | || || || || ||||| ||||||| | | || | || | |
Sbjct 6420 CCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAA-TTCCTCAAT 6362
Query 114041 CCCTT-TTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCT-TTGTCTCCC 114098
|| || || | | | | |||| | | | |||||||| | || | ||| | |
Sbjct 6361 CCTTTCTTGGCGACTT-GAGCCTTTAAGTCATCCCAGTCCCAAA-GATCGGTTGGTTTCT 6304
Query 114099 CCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGT 114158
| |||||||||| | || |||||||||| || ||||||||||| || |||| |
Sbjct 6303 TATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCGTATGTTGAAT 6244
Query 114159 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218
| | || || | | || | || | | || | || || || || | ||||
Sbjct 6243 AGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATAAAGTCT 6184
Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA--AACGCGAGTCG--GCAC 114274
|||| || || ||||| | | || || ||| || |||| || || |||
Sbjct 6183 CAAAGATCTGAATATTCAATTCACGAGCTTCT--GGACTCTCGAACGGTAGACGAAGCAT 6126
Query 114275 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 114334
|| || || || || |||||||||| ||||| |||| || | || |||||||||
Sbjct 6125 GAAGAAAGTA--TCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTCATATTC 6068
Query 114335 GACTTTCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 114393
|| || || || ||| | | ||||| | ||||| || ||||| || || | ||
Sbjct 6067 GAATTACGGGCC-TCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAAGTTACG 6009
Query 114394 GGTGACAACCTTTGTGATTTCATGAAGCTTTTC---GT--AATCAAAAC---TGCGAGTC 114445
|| |||||||| ||||||| ||| | || || || || ||| || | | ||
Sbjct 6008 AGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTTCTCATC 5949
Query 114446 TC-TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAG--AGGTCTCA 114502
| |||| || || || ||||| ||| |||| |||||| ||| | |||
Sbjct 5948 TGATTCAACGA-ATGCT--GGAAGACAGATATTAGCCAAATTACAGACACCAACTTCTTT 5892
Query 114503 TCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAG 114562
| | | ||| | || | || || || || || || |||||| || || |
Sbjct 5891 TGGTGAGGAGTAT--TCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCGAGA 5834
Query 114563 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTC 114622
||||||||||| |||| ||||||| ||||| ||||| | |||| |||| || || ||
Sbjct 5833 TTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGTT 5774
Query 114623 TCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGC 114681
|| ||||||| || | ||| | ||| | | | | | || | ||||| | |
Sbjct 5773 TCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG-ACAGTTCTTCTACC 5715
Query 114682 TCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGA 114741
|| || |||| || || || ||||| | ||| ||||| ||||| | | || ||
Sbjct 5714 ACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGGA 5655
Query 114742 GAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTT 114801
|| || || || | | || |||| | || |||| ||||| || || ||||||||
Sbjct 5654 AAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCTT 5595
Query 114802 CATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 114861
|||||| || || || ||||| ||||||| ||| | ||| || | | ||||| |
Sbjct 5594 CATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTT 5535
Query 114862 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 114921
|| || || | || | || | || || | |||||| || ||||| ||||||| ||
Sbjct 5534 ACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATA 5475
Query 114922 CACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGC 114975
|| || || | || | |||| |||| | || | ||||| || || ||
Sbjct 5474 GACGGCAATGGCACC---AGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGTACT 5418
Query 114976 ATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TA 115033
|| || || |||| ||| ||||||||||||| ||| ||||| || || || ||
Sbjct 5417 GTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAATGTA 5358
Query 115034 CGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 115093
||| | | | || | | | |||||| |||||||| ||||| || || || ||
Sbjct 5357 TGAGCC--AGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGAA 5300
Query 115094 ATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCG 115153
||| ||||||| | | | | | ||||||| || ||||| |||||| | || | ||
Sbjct 5299 ATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGCA 5240
Query 115154 ATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 115213
| | ||| || ||||| || || || || ||||| || ||||| | ||||||||
Sbjct 5239 ACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAA 5180
Query 115214 GCGTGGATGAA 115224
|| || ||||
Sbjct 5179 GCATGCGTGAA 5169
>seq173
Length=13397
Score = 91.5 bits (100), Expect = 2e-13
Identities = 273/411 (66%), Gaps = 14/411 (3%)
Strand=Plus/Minus
Query 125768 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 125827
|||| ||||||||||||||| ||||| || |||| || |||||||| |||||||||
Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401
Query 125828 GGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA-CGATC---CGA 125883
|| ||||| | ||| | | || ||| ||| | ||| | | ||| ||
Sbjct 11400 GGATTCTTGGCGTTGTAGACC-TTCTCAC----ATCCGAGAGAGACCAGCAATCTGTCGG 11346
Query 125884 GAC-GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTACATGGG 125941
|| | | |||| ||| ||| ||||| | || |||||||||| | | | ||| ||
Sbjct 11345 CACAGAAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACA-GGT 11287
Query 125942 AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATG 126001
| ||||| ||| | |||||| || || ||||| ||| || ||| | |||
Sbjct 11286 AATGCGTCTCTCCAGAAACTCTTCTCGATATCGACGGCCTCCGTCATGATTCTCTTGATG 11227
Query 126002 GTGTCCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCTTGGTG 126060
|| | | ||| || || |||| | ||| || ||| || || |||
Sbjct 11226 ATGGTCTTACTAGGAGGAT-GCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTG 11168
Query 126061 GAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCG 126120
|||||||| || | | |||| || || |||||||| || |||||||| | ||| |
Sbjct 11167 TAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCT 11108
Query 126121 CTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171
||||||||||||||| |||| | ||| || || |||||||| | |||||
Sbjct 11107 CTTCTTCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTC 11057
>seq116
Length=77448
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAAC 11016
|||||||| || ||||||||||| || || ||||| | ||| |||||||||||||
Sbjct 73830 CTTACCGATAGCATCAATTTCATCAATAAACACGATCGATGGTGCATTTTCACGGGCAGT 73771
Query 11017 TTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGC 11076
| ||| | || || || | ||||||||||| ||||||||||| || || | ||
Sbjct 73770 CTTAAATAATTCACGAACACGGGATGCACCGACACCGACAAACATTTCAACGAATTCGGA 73711
Query 11077 GGCGGAACATTGGAT-GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135
||||| | | || ||| || || || | ||| || | ||| ||| || | |
Sbjct 73710 ACCGGAA-ACAGAATAGAATGGAACACCGGCCTGACCGGCAGTAGCTTTGGCAAGCAAAG 73652
Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190
|||| || || |||||| || | | | |||||||| || ||| |||||||
Sbjct 73651 TCTTACCGGTACCAGGTGGACCAGACAAGATAGCACCACGAGGAATCTTGGCACC 73597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597352263421320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |