Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq115 226 3e-54 seq173 91.5 2e-13 seq116 87.8 2e-12 >seq115 Length=359903 Score = 226 bits (250), Expect = 3e-54 Identities = 1084/1691 (64%), Gaps = 53/1691 (3%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||| | || |||| || || | ||||||||| || ||||| || | Sbjct 6837 TGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGAC 6778 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCA--T 113682 ||| |||||| |||| | ||||| || | |||||| | ||||| || || | Sbjct 6777 CCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAAT 6718 Query 113683 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAAT 113742 ||| | ||||| || |||||| |||| | || | || || ||||||||||| Sbjct 6717 GAATA--TTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCATATCAAT 6660 Query 113743 CACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTT-AATATCATCTGGGA 113801 ||| ||| ||| ||||| || || | || | ||||| ||| || ||||| | Sbjct 6659 GACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTC-TCTGGCA 6601 Query 113802 TATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTG 113861 || | || ||||| || ||| |||| | || | |||||||| | || Sbjct 6600 CATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGCATTAC 6541 Query 113862 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 113921 ||||| ||| || | ||| |||| || | || ||| |||| ||||||| Sbjct 6540 TCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAACTCAC 6481 Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981 | || | | ||| ||||||| |||| ||| ||||||| || || || |||| || Sbjct 6480 CGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTTGTAAC 6421 Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTACGGAGA 114040 ||| || || | || || || || ||||| ||||||| | | || | || | | Sbjct 6420 CCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAA-TTCCTCAAT 6362 Query 114041 CCCTT-TTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCT-TTGTCTCCC 114098 || || || | | | | |||| | | | |||||||| | || | ||| | | Sbjct 6361 CCTTTCTTGGCGACTT-GAGCCTTTAAGTCATCCCAGTCCCAAA-GATCGGTTGGTTTCT 6304 Query 114099 CCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGT 114158 | |||||||||| | || |||||||||| || ||||||||||| || |||| | Sbjct 6303 TATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCGTATGTTGAAT 6244 Query 114159 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 | | || || | | || | || | | || | || || || || | |||| Sbjct 6243 AGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATAAAGTCT 6184 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA--AACGCGAGTCG--GCAC 114274 |||| || || ||||| | | || || ||| || |||| || || ||| Sbjct 6183 CAAAGATCTGAATATTCAATTCACGAGCTTCT--GGACTCTCGAACGGTAGACGAAGCAT 6126 Query 114275 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 114334 || || || || || |||||||||| ||||| |||| || | || ||||||||| Sbjct 6125 GAAGAAAGTA--TCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTCATATTC 6068 Query 114335 GACTTTCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 114393 || || || || ||| | | ||||| | ||||| || ||||| || || | || Sbjct 6067 GAATTACGGGCC-TCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAAGTTACG 6009 Query 114394 GGTGACAACCTTTGTGATTTCATGAAGCTTTTC---GT--AATCAAAAC---TGCGAGTC 114445 || |||||||| ||||||| ||| | || || || || ||| || | | || Sbjct 6008 AGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTTCTCATC 5949 Query 114446 TC-TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAG--AGGTCTCA 114502 | |||| || || || ||||| ||| |||| |||||| ||| | ||| Sbjct 5948 TGATTCAACGA-ATGCT--GGAAGACAGATATTAGCCAAATTACAGACACCAACTTCTTT 5892 Query 114503 TCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAG 114562 | | | ||| | || | || || || || || || |||||| || || | Sbjct 5891 TGGTGAGGAGTAT--TCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCGAGA 5834 Query 114563 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTC 114622 ||||||||||| |||| ||||||| ||||| ||||| | |||| |||| || || || Sbjct 5833 TTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGTT 5774 Query 114623 TCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGC 114681 || ||||||| || | ||| | ||| | | | | | || | ||||| | | Sbjct 5773 TCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG-ACAGTTCTTCTACC 5715 Query 114682 TCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGA 114741 || || |||| || || || ||||| | ||| ||||| ||||| | | || || Sbjct 5714 ACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGGA 5655 Query 114742 GAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTT 114801 || || || || | | || |||| | || |||| ||||| || || |||||||| Sbjct 5654 AAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCTT 5595 Query 114802 CATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 114861 |||||| || || || ||||| ||||||| ||| | ||| || | | ||||| | Sbjct 5594 CATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTT 5535 Query 114862 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 114921 || || || | || | || | || || | |||||| || ||||| ||||||| || Sbjct 5534 ACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATA 5475 Query 114922 CACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGC 114975 || || || | || | |||| |||| | || | ||||| || || || Sbjct 5474 GACGGCAATGGCACC---AGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGTACT 5418 Query 114976 ATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TA 115033 || || || |||| ||| ||||||||||||| ||| ||||| || || || || Sbjct 5417 GTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAATGTA 5358 Query 115034 CGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 115093 ||| | | | || | | | |||||| |||||||| ||||| || || || || Sbjct 5357 TGAGCC--AGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGAA 5300 Query 115094 ATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCG 115153 ||| ||||||| | | | | | ||||||| || ||||| |||||| | || | || Sbjct 5299 ATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGCA 5240 Query 115154 ATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 115213 | | ||| || ||||| || || || || ||||| || ||||| | |||||||| Sbjct 5239 ACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAA 5180 Query 115214 GCGTGGATGAA 115224 || || |||| Sbjct 5179 GCATGCGTGAA 5169 >seq173 Length=13397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 273/411 (66%), Gaps = 14/411 (3%) Strand=Plus/Minus Query 125768 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 125827 |||| ||||||||||||||| ||||| || |||| || |||||||| ||||||||| Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401 Query 125828 GGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA-CGATC---CGA 125883 || ||||| | ||| | | || ||| ||| | ||| | | ||| || Sbjct 11400 GGATTCTTGGCGTTGTAGACC-TTCTCAC----ATCCGAGAGAGACCAGCAATCTGTCGG 11346 Query 125884 GAC-GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTACATGGG 125941 || | | |||| ||| ||| ||||| | || |||||||||| | | | ||| || Sbjct 11345 CACAGAAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACA-GGT 11287 Query 125942 AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATG 126001 | ||||| ||| | |||||| || || ||||| ||| || ||| | ||| Sbjct 11286 AATGCGTCTCTCCAGAAACTCTTCTCGATATCGACGGCCTCCGTCATGATTCTCTTGATG 11227 Query 126002 GTGTCCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCTTGGTG 126060 || | | ||| || || |||| | ||| || ||| || || ||| Sbjct 11226 ATGGTCTTACTAGGAGGAT-GCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTG 11168 Query 126061 GAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCG 126120 |||||||| || | | |||| || || |||||||| || |||||||| | ||| | Sbjct 11167 TAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCT 11108 Query 126121 CTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||||||||||||||| |||| | ||| || || |||||||| | ||||| Sbjct 11107 CTTCTTCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTC 11057 >seq116 Length=77448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAAC 11016 |||||||| || ||||||||||| || || ||||| | ||| ||||||||||||| Sbjct 73830 CTTACCGATAGCATCAATTTCATCAATAAACACGATCGATGGTGCATTTTCACGGGCAGT 73771 Query 11017 TTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGC 11076 | ||| | || || || | ||||||||||| ||||||||||| || || | || Sbjct 73770 CTTAAATAATTCACGAACACGGGATGCACCGACACCGACAAACATTTCAACGAATTCGGA 73711 Query 11077 GGCGGAACATTGGAT-GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135 ||||| | | || ||| || || || | ||| || | ||| ||| || | | Sbjct 73710 ACCGGAA-ACAGAATAGAATGGAACACCGGCCTGACCGGCAGTAGCTTTGGCAAGCAAAG 73652 Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 |||| || || |||||| || | | | |||||||| || ||| ||||||| Sbjct 73651 TCTTACCGGTACCAGGTGGACCAGACAAGATAGCACCACGAGGAATCTTGGCACC 73597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352263421320