Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq115 105 7e-18 >seq115 Length=359903 Score = 105 bits (116), Expect = 7e-18 Identities = 281/428 (66%), Gaps = 1/428 (0%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || ||| ||||||| || || || || || ||||||||||| |||||| || | | Sbjct 5184 CCAACCTTGTTCAATGCAGGTACTCCTAGACCTCAGATGTCTTCATGTTTCTTGGTTGCC 5243 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | || | ||||||||| || || | ||| | | ||| | || || || || Sbjct 5244 ATGAAAGATGACTCCATCGAAGGTATCTACGATACTTTGAAGCAGTGCGCTTTAATTTCT 5303 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 ||| ||| || || ||||| || | |||| || | ||||| | || || ||||| Sbjct 5304 AAAACCGCCGGTGGTATCGGTATGCATATCCATAACATTCGTGCTACTGGCTCATACATT 5363 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||||||||||| || || || || || | |||||| | || |||||||||| | Sbjct 5364 GCAGGTACCAATGGTACTTCTAATGGTATCATTCCTATGATTCGTGTCTTCAACAGTACT 5423 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || | || || || || |||||| | | | ||| | | || |||||| | || Sbjct 5424 GCCAGATATGTCGATCAAGGTGGTAACAAGCGTCCTGGTGCCATTGCCGTCTATTTGGAA 5483 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || ||||| || || | | ||||||||| | || | |||||| || || || | Sbjct 5484 CCTTGGCATGCAGATATCTTCGATTTCATCGATATCCGGATGAACCATGGTAAGGAAGAG 5543 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 || ||| | || | ||| ||||| ||| | || || ||||| ||||| || || Sbjct 5544 ATTAGAGCCCGTGATTTGTTCCCAGCTCTTTGGATTCCTGATCTTTTCATGAAGCGTGTG 5603 Query 94318 G-AGaaaa 94324 | |||||| Sbjct 5604 GAAGAAAA 5611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722093056840