Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq110 105 6e-18 seq1 100 3e-16 >seq110 Length=92542 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || || || |||||||| || ||||| ||||| | ||| | | Sbjct 52914 CTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAGAAAGAGTTCTGCCA 52973 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| ||||| || || | ||||||| || || || || ||||| ||||| ||| Sbjct 52974 TCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTA 53033 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || ||||| |||| || | ||||| ||||||||||| || | || | Sbjct 53034 TCCTGGATCTTTTGCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATA 53093 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || || || || |||||||||||| Sbjct 53094 GTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATC 53129 >seq1 Length=504328 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || ||||| | ||| || || ||||| || Sbjct 435098 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAACTGC 435157 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||||| || || || || || || || || ||||| ||||| || Sbjct 435158 TTACCAGCGAAAATCAATCTCTGTTGATCAGGTGGGATTCCCTCCTTATCCTGAATCTTC 435217 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | |||||| |||||||||||||| | |||| || || || || Sbjct 435218 TGCTTGACATTGTCAATGGTGTCAGAAGACTCGACTTCCAAGGTAATGGTCTTACCCGTC 435277 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||||||||| Sbjct 435278 AAGGTCTTAACGAAAATTTGCAT 435300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002188642840