Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq115 203 4e-47
seq173 102 1e-16
>seq115
Length=359903
Score = 203 bits (224), Expect = 4e-47
Identities = 1083/1697 (64%), Gaps = 65/1697 (4%)
Strand=Plus/Minus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||| |||| | || |||| || || | ||||||||| || ||||| || |
Sbjct 6837 TGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGAC 6778
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCA--T 115643
||| |||||| |||| | ||||| || | |||||| | ||||| || || |
Sbjct 6777 CCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAAT 6718
Query 115644 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 115703
||| | ||||| || |||||| |||| | || | || || |||||||||||
Sbjct 6717 GAATA--TTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCATATCAAT 6660
Query 115704 CACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTT-AATATCATCTGGGA 115762
||| ||| ||| ||||| || || | || | ||||| ||| || ||||| |
Sbjct 6659 GACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTC-TCTGGCA 6601
Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTG 115822
|| | || |||||||| ||| |||| | || | |||||||| | ||
Sbjct 6600 CATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGCATTAC 6541
Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882
||||| ||| || | ||| |||| || | | ||| |||| |||||||
Sbjct 6540 TCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAACTCAC 6481
Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942
| || | | ||| |||||||||||| ||| ||||||| || || || |||| ||
Sbjct 6480 CGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTTGTAAC 6421
Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCC-ATGAGAAGGCTGTTGCGGAGA 116001
||| || || | ||| || || || ||||| |||||| || | || || |
Sbjct 6420 CCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAA--------CGAATT 6369
Query 116002 CC-CACCCCCCTAAT-GCG--TT---CCTTGAGGGCGTCCCAGTCGTAGTTGAGC-TTTG 116053
|| || || | | ||| || |||| | | | |||||||| | || | |||
Sbjct 6368 CCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCA-AAGATCGGTTG 6310
Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113
| | | |||||||||| | || |||||||||| || ||||||||||| || |||
Sbjct 6309 GTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCGTATG 6250
Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173
| ||| | || || | | || | || | | || | || || || || |
Sbjct 6249 TTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATA 6190
Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGA--ATCAAACGCGAGACG 116231
|||||||| || || ||||| | | || || ||| || |||| |||||
Sbjct 6189 AAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTC--TGGACTCTCGAACGGTAGACG 6132
Query 116232 --GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289
||| || || | ||| || |||||||||| ||||| |||| || | || ||||
Sbjct 6131 AAGCATGAAGAAAGT--ATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTC 6074
Query 116290 ATATTAGACTTTCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348
||||| || || || || ||| || ||||| | ||||| || ||||| || || |
Sbjct 6073 ATATTCGAATTACGGGC-CTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAA 6015
Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC---GT--AATCAAAAC---TG 116400
|| || |||||||| ||||||| ||| | || || || || ||| || |
Sbjct 6014 GTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTT 5955
Query 116401 CGAGTCT-CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC--ACACAGAG 116457
| ||| |||| || || || ||||| ||| |||| ||||| |||| |
Sbjct 5954 CTCATCTGATTCAACGA-ATGCT--GGAAGACAGATATTAGCCAAATTACAGACACCAAC 5898
Query 116458 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTG 116517
||| | | | | ||| || | || || || || || || |||||| ||
Sbjct 5897 TTCTTTTGGTGA--GGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTA 5840
Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577
|| | ||||||||||| |||| ||||||| ||||| ||||||| ||| |||| ||
Sbjct 5839 CCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTA 5780
Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGC 116636
|| || || ||||||| || | ||| | ||| | | | | | || | |||||
Sbjct 5779 CCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG-ACAGTTCT 5721
Query 116637 GTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC 116696
| | || || |||| || || || ||||| | || ||||| ||||| |
Sbjct 5720 TCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGAC 5661
Query 116697 CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAAC 116756
|| || || || || || | | || |||| | || |||| ||||| || || ||
Sbjct 5660 ATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCAC 5601
Query 116757 CCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC 116816
||||||||||| || || || ||||| || || | ||| | ||| || | | ||
Sbjct 5600 ACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTC 5541
Query 116817 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 116876
||| | || || || | || | || | || || | |||||| || ||||| |||||
Sbjct 5540 TTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTC 5481
Query 116877 CAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGC 116930
|| || || || || | || | |||| |||| | || | ||||| || ||
Sbjct 5480 CAAATAGACGGCAATGGCACCAGGACGCTTG---TTACCACCTTGATCGACATATCTGGC 5424
Query 116931 CGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 116990
|| ||| || || |||| ||| ||||||||||||| ||| ||||| || ||
Sbjct 5423 AGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGC 5364
Query 116991 AA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 117048
|| || ||| | | || | | | ||||| |||||||| ||||| || ||
Sbjct 5363 AATGTATGAGCC--AGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTT 5306
Query 117049 TTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 117108
|| || ||| ||||||| | | | | | ||||||| || ||||| |||||| | ||
Sbjct 5305 TTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTC 5246
Query 117109 TTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTT 117168
| || | | ||| || ||||| || || || || ||||| || ||||| | ||||
Sbjct 5245 ATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTT 5186
Query 117169 GGTGTCGCGTGGATGAA 117185
|||| || || ||||
Sbjct 5185 GGTGAAGCATGCGTGAA 5169
>seq173
Length=13397
Score = 102 bits (112), Expect = 1e-16
Identities = 158/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| |||||||| || | | |||| || || |||||||| ||||||||||| | |||
Sbjct 11170 GTGTAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACC 11111
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
| ||||||||||||||| |||| | ||| || || |||||||| | ||||| |
Sbjct 11110 TCTCTTCTTCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGC 11051
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCA-CTTCATCG 127709
|| || |||| | | |||||| | || | ||| ||| | ||| || || |
Sbjct 11050 TGCAAAGGCAACCAATCTCTCGGCGTACAAGGCGTCCTTGTTATTCATCCATCTGTAT-G 10992
Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752
||||| ||||||||| || |||| ||| | ||||| ||| ||
Sbjct 10991 CCCACAGTGCCTTTTCCTTGATAGGTGGAATGGTCTCGATGGC 10949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613505827277640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |