Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq115 203 4e-47 seq173 102 1e-16 >seq115 Length=359903 Score = 203 bits (224), Expect = 4e-47 Identities = 1083/1697 (64%), Gaps = 65/1697 (4%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||| | || |||| || || | ||||||||| || ||||| || | Sbjct 6837 TGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGAC 6778 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCA--T 115643 ||| |||||| |||| | ||||| || | |||||| | ||||| || || | Sbjct 6777 CCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAAT 6718 Query 115644 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 115703 ||| | ||||| || |||||| |||| | || | || || ||||||||||| Sbjct 6717 GAATA--TTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCATATCAAT 6660 Query 115704 CACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTT-AATATCATCTGGGA 115762 ||| ||| ||| ||||| || || | || | ||||| ||| || ||||| | Sbjct 6659 GACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTC-TCTGGCA 6601 Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTG 115822 || | || |||||||| ||| |||| | || | |||||||| | || Sbjct 6600 CATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGCATTAC 6541 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882 ||||| ||| || | ||| |||| || | | ||| |||| ||||||| Sbjct 6540 TCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAACTCAC 6481 Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 | || | | ||| |||||||||||| ||| ||||||| || || || |||| || Sbjct 6480 CGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTTGTAAC 6421 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCC-ATGAGAAGGCTGTTGCGGAGA 116001 ||| || || | ||| || || || ||||| |||||| || | || || | Sbjct 6420 CCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAA--------CGAATT 6369 Query 116002 CC-CACCCCCCTAAT-GCG--TT---CCTTGAGGGCGTCCCAGTCGTAGTTGAGC-TTTG 116053 || || || | | ||| || |||| | | | |||||||| | || | ||| Sbjct 6368 CCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCA-AAGATCGGTTG 6310 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 | | | |||||||||| | || |||||||||| || ||||||||||| || ||| Sbjct 6309 GTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCGTATG 6250 Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173 | ||| | || || | | || | || | | || | || || || || | Sbjct 6249 TTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATA 6190 Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGA--ATCAAACGCGAGACG 116231 |||||||| || || ||||| | | || || ||| || |||| ||||| Sbjct 6189 AAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTC--TGGACTCTCGAACGGTAGACG 6132 Query 116232 --GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289 ||| || || | ||| || |||||||||| ||||| |||| || | || |||| Sbjct 6131 AAGCATGAAGAAAGT--ATCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTC 6074 Query 116290 ATATTAGACTTTCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||||| || || || || ||| || ||||| | ||||| || ||||| || || | Sbjct 6073 ATATTCGAATTACGGGC-CTCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAA 6015 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC---GT--AATCAAAAC---TG 116400 || || |||||||| ||||||| ||| | || || || || ||| || | Sbjct 6014 GTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTT 5955 Query 116401 CGAGTCT-CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC--ACACAGAG 116457 | ||| |||| || || || ||||| ||| |||| ||||| |||| | Sbjct 5954 CTCATCTGATTCAACGA-ATGCT--GGAAGACAGATATTAGCCAAATTACAGACACCAAC 5898 Query 116458 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTG 116517 ||| | | | | ||| || | || || || || || || |||||| || Sbjct 5897 TTCTTTTGGTGA--GGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTA 5840 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 || | ||||||||||| |||| ||||||| ||||| ||||||| ||| |||| || Sbjct 5839 CCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTA 5780 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGC 116636 || || || ||||||| || | ||| | ||| | | | | | || | ||||| Sbjct 5779 CCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG-ACAGTTCT 5721 Query 116637 GTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC 116696 | | || || |||| || || || ||||| | || ||||| ||||| | Sbjct 5720 TCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGAC 5661 Query 116697 CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAAC 116756 || || || || || || | | || |||| | || |||| ||||| || || || Sbjct 5660 ATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCAC 5601 Query 116757 CCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC 116816 ||||||||||| || || || ||||| || || | ||| | ||| || | | || Sbjct 5600 ACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTC 5541 Query 116817 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 116876 ||| | || || || | || | || | || || | |||||| || ||||| ||||| Sbjct 5540 TTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTC 5481 Query 116877 CAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGC 116930 || || || || || | || | |||| |||| | || | ||||| || || Sbjct 5480 CAAATAGACGGCAATGGCACCAGGACGCTTG---TTACCACCTTGATCGACATATCTGGC 5424 Query 116931 CGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 116990 || ||| || || |||| ||| ||||||||||||| ||| ||||| || || Sbjct 5423 AGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGC 5364 Query 116991 AA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 117048 || || ||| | | || | | | ||||| |||||||| ||||| || || Sbjct 5363 AATGTATGAGCC--AGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTT 5306 Query 117049 TTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 117108 || || ||| ||||||| | | | | | ||||||| || ||||| |||||| | || Sbjct 5305 TTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTC 5246 Query 117109 TTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTT 117168 | || | | ||| || ||||| || || || || ||||| || ||||| | |||| Sbjct 5245 ATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTT 5186 Query 117169 GGTGTCGCGTGGATGAA 117185 |||| || || |||| Sbjct 5185 GGTGAAGCATGCGTGAA 5169 >seq173 Length=13397 Score = 102 bits (112), Expect = 1e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| |||||||| || | | |||| || || |||||||| ||||||||||| | ||| Sbjct 11170 GTGTAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACC 11111 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 | ||||||||||||||| |||| | ||| || || |||||||| | ||||| | Sbjct 11110 TCTCTTCTTCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGC 11051 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCA-CTTCATCG 127709 || || |||| | | |||||| | || | ||| ||| | ||| || || | Sbjct 11050 TGCAAAGGCAACCAATCTCTCGGCGTACAAGGCGTCCTTGTTATTCATCCATCTGTAT-G 10992 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| ||||||||| || |||| ||| | ||||| ||| || Sbjct 10991 CCCACAGTGCCTTTTCCTTGATAGGTGGAATGGTCTCGATGGC 10949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505827277640