Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq115 266 4e-66 seq116 87.8 2e-12 >seq115 Length=359903 Score = 266 bits (294), Expect = 4e-66 Identities = 1113/1729 (64%), Gaps = 47/1729 (3%) Strand=Plus/Plus Query 111627 ATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGAC 111686 ||||| || || | ||||||||||| |||||| | ||| | ||| | ||| || Sbjct 5091 ATGCGTGTTGCCGTTGGTATCCATGGTAGTGATATTCCTAAAGTTCTTGAGTCTTACAAC 5150 Query 111687 AAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCA 111746 ||||| || |||| || || |||||||| | ||||| || ||||| || Sbjct 5151 CTCATGTCTAAACGTTACTTCACGCATGCTTCACCAACCTTGTTCAATGCAGGTACTCCT 5210 Query 111747 AGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATT 111806 ||||| || ||||| |||||| | |||| | || || || || ||| | || || Sbjct 5211 AGACCTCAGATGTCTTCATGTTTCTTGGTTGCCATGAAAGATGACTCCATCGAAGGTATC 5270 Query 111807 TACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCAC 111866 |||| ||| | | | || || ||| || || || ||||||||||| ||||| Sbjct 5271 TACGATACTTTGAAGCAGTGCGCTTTAATTTCTAAAACCGCCGGTGGTATCGGTATGCAT 5330 Query 111867 ATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACAAATGGTCAATCAGATG 111924 |||||| | | | || | | ||| | ||| |||||| |||||| || ||| Sbjct 5331 ATCCATAACATTCGTGCTA--CTGGCTCATACATTGCAGGTACCAATGGTACTTCTAATG 5388 Query 111925 GTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG-- 111982 |||| ||||| ||| |||| || || ||| || || | ||||| | |||| ||| Sbjct 5389 GTATCATTCCTATGATTCGTGTCTTCAACAGTACTGCCAGATATGTCGATCAAGGTGGTA 5448 Query 111983 ----GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGG 112038 ||||| || | || || |||||| | || || ||||| || |||||| | | Sbjct 5449 ACAAGCGTC---CTGGTGCCATTGCCGTCTATTTGGAACCTTGGCATGCAGATATCTTCG 5505 Query 112039 AGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCT 112098 | ||| | || | || | ||||| ||| | || ||| | ||| ||| | ||| Sbjct 5506 ATTTCATCGATATCCGGATGAACCATGGTAAGGAAGAGATTAGAGCCCGTGATTTGTTCC 5565 Query 112099 CCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTC 112158 | ||||| |||||||| ||||| ||||||||| | || || || | ||| ||| || Sbjct 5566 CAGCTCTTTGGATTCCTGATCTTTTCATGAAGCGTGTGGAAGAAAATGGTCCATGGACTT 5625 Query 112159 TCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCC 112218 | || | || | || || || || ||||||| | ||||| ||||| ||| Sbjct 5626 TGTTCTCACCTTCTGAAGCTCCTGGCCTTTCCGATGTCTACGGTGATGAGTTCGAAAAAT 5685 Query 112219 TCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TG 112277 | ||||| || || || | ||| |||| | | || || | || | | | | Sbjct 5686 TGTACACCAAATATGAAAAGGAAGGTCGTGGTAGAAGAACTGT-CAAGGCACAAAAGCTT 5744 Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | ||| | || | ||||| || |||||||| |||| ||| | |||||||| Sbjct 5745 TGGTATCAGATTTTGGAGGCCCAAACTGAAACTGGTACTCCATTCATGATCTACAAAGAT 5804 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 || |||||| ||||||||||||||||||| | ||| || ||| |||||| | || Sbjct 5805 GCTTGTAACAGAAAGAGTAATCAAAAGAATCTCGGTACTATTAAGTCATCCAACTTATGC 5864 Query 112398 ACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAAT 112456 || | | |||| | | || || | || || ||| ||||| | || ||| Sbjct 5865 TGTGAGGTTGTTGAATACTCCTCACCAAAAGAAGTTGG-TGTCTGTAATTTGGC--TAAT 5921 Query 112457 CGCTCTCCCCAAGTAT--GTGGATCCAGA-GACAAA--GAC---ATTTGATTATGAAAAA 112508 || || | || || || || |||| || ||| | | || | | ||| ||| Sbjct 5922 ATCTGTCTTCCAGCATTCGTTGAATCAGATGAGAAATCGTCTTGGTTCAACTTTGAGAAA 5981 Query 112509 CTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTT 112568 | || || | || || ||| || ||| | ||||||||||| || || || | Sbjct 5982 TTACATCAAATCACTAAGGTTGTTACTCGTAACTTGAACAGAGTTATAGACAGGAACTAC 6041 Query 112569 TACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGT 112627 || || ||| ||| || ||||| || ||||||||| | | || |||| | ||||| | Sbjct 6042 TATCCAGTTCCAGA-GGCCCGTAATTCGAATATGAGAAATAGACCTATTGCTATCGGTAT 6100 Query 112628 CCAAGGTCTCGCGGA---TGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGC 112684 ||||||||| || || | | ||||| ||| ||| | || || ||| ||||| Sbjct 6101 CCAAGGTCTTGCAGATACTTTCTTCATGCTTCGTCTAC-CGTTCGAGAGTCC--AGAAGC 6157 Query 112685 GAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTC 112744 ||| | ||| | || |||||||| | || || || || | || | || Sbjct 6158 TCGTGAATTGAATATTCAGATCTTTGAGACTTTATACCATGCTGCATTGGAAGAATCTTG 6217 Query 112745 GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGG 112804 | | || | | || ||| | ||| ||| | || || || ||||| || |||| Sbjct 6218 TCAACTAGCTGCCGAGGAAGGTACCTATTCAACATACGAAGGATCGCCAGCATCTAAAGG 6277 Query 112805 GGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGACGCTC 112863 | ||||||| |||||||| |||| || ||||| | || | |||||||| | Sbjct 6278 TATCCTTCAATATGATATGT-GGAATAAGAAACCAACCGATCTTTGGGACTGGGATGACT 6336 Query 112864 TCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAA 112923 | |||| | || |||| || | | || | || ||||||||||||||| Sbjct 6337 TAAAGGCTCAAGTCGCCAAGAAAGGATTGAGGAATTCGTTGTTATTGGCACCAATGCCAA 6396 Query 112924 CAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACA 112983 | || || || | || || ||||| | || ||||| || || || | ||| | |||| Sbjct 6397 CTGCATCTACATCTCAGATTATGGGTTACAACGAATGTTTCGAGCCATTCACATCCAACA 6456 Query 112984 TCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATG 113043 |||||| |||||| | || || ||||| |||||| || || | || | | Sbjct 6457 TCTATCAAAGAAGAGTTTTGGCCGGTGAGTTCCAGATTGTTAATCCTTATATGTTGAAGG 6516 Query 113044 ACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTG 113103 || ||| || || ||| ||||| || | |||||||| | || | || | || Sbjct 6517 ACTTCATCGATATGGGTATCTGGAGTAATGCAATGAAGGACTTTATCATTAAGGATAATG 6576 Query 113104 GTTCCATTCAAAATATTGTGGATATTCCAGATGAAATT-AAGAAGTTGTACCGCACAGTT 113162 |||| || || || | || | ||||| |||||| ||||| ||||| || || ||| Sbjct 6577 GTTCTATCCAGAACTTACCAAATGTGCCAGA-GAAATTCAAGAAATTGTATCGTACCGTT 6635 Query 113163 TGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGAT 113222 ||||| ||| ||| ||||||||| ||||| || || | ||| | ||| | Sbjct 6636 TGGGAGATCTCACAGAAATCTGTCATTGATATGGCTGCCGACAGAGGTGCATACATCTGT 6695 Query 113223 CAAAGTCAAAGT--ATGAATCTATTCA--TGGAAAGTCCAACGATGTCCAAGCTCTCTTC 113278 ||| ||| ||| ||||| |||||| || || ||||| ||| ||| | |||| Sbjct 6696 CAA--TCACAGTCCATGAA--TATTCATTTGCAATCCCCAACTATGGGTAAGTTGACTTC 6751 Query 113279 TATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 |||||| | || | |||||||||||||| || || || ||||| ||| Sbjct 6752 CATGCACTTCTATGGATGGAAGAAGGGTCTTAAGACTGGTATGTACTAC 6800 >seq116 Length=77448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAG 16123 |||||||| |||||||| || ||||| ||||| |||||| || || | ||| ||| | Sbjct 73820 GCATCAATTTCATCAATAAACACGATCGATGGTGCATTTTCACGGGCAGTCTT-AAATAA 73762 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 || || ||||| || || ||||| |||||||| || || || | | ||||| | Sbjct 73761 TTCACGAACACGGGATGCACCGACACCGACAAACATTTCAACGAATTCGGAACCGGAA-A 73703 Query 16184 TTGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | || ||| || ||| | | ||| ||| | ||| ||| || | ||||||||| | Sbjct 73702 CAGAATAGAATGGAACACCGGCCTGACCGGCAGTAGCTTTGGCAAGCAAAGTCTTACCGG 73643 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||| || ||| | | || ||||| || ||||||||||| || Sbjct 73642 TACCAGGTGGACCAGACAAGATAGCACCACGAGGAATCTTGGCACC 73597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741011088880