Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq115 208 9e-49 seq116 131 2e-25 seq113 84.2 3e-11 >seq115 Length=359903 Score = 208 bits (230), Expect = 9e-49 Identities = 512/776 (66%), Gaps = 9/776 (1%) Strand=Plus/Minus Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 || |||||||| |||||| ||| | ||||| ||||| || ||| || ||| Sbjct 5863 CATAAGTTGGATGACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCA 5804 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 || || |||| |||| |||| ||||||||||| || || | || | ||| | ||| Sbjct 5803 TCTTTGTAGATCATGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAA 5744 Query 110470 ACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAG 110529 | | || ||||||| || | ||||||||| || || ||||||||||| Sbjct 5743 AGCTTTTGTGCCTTGACAGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAAT 5684 Query 110530 TCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 | || || || | ||||| ||||| ||||| || || | || |||| | Sbjct 5683 TTTTCGAACTCATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAA 5624 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 | ||| ||| || || || | ||||||||| || ||||||||||| | || | | Sbjct 5623 GTCCATGGACCATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGG 5564 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 || | |||||| | | |||||| | ||| ||||| | || | || | || || Sbjct 5563 AACAAATCACGGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCG 5504 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------A 110763 | |||||| | ||||| ||||| | |||||| || |||| || | |||| | Sbjct 5503 AAGATATCTGCATGCCAAGGTTCCAAATAGACGGCAATGGCACC---AGGACGCTTGTTA 5447 Query 110764 CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823 || | || | ||||| | || || |||||||| | | ||||||||| || ||| Sbjct 5446 CCACCTTGATCGACATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCA 5387 Query 110824 TCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGC 110883 | || |||||| ||||| ||| || | | |||||||||| ||||||||| Sbjct 5386 TTAGAAGTACCATTGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGC 5327 Query 110884 ATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATA 110943 ||||| |||||||| || ||| |||| || |||| | | ||| | || ||| Sbjct 5326 ATACCGATACCACCGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATA 5267 Query 110944 CCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGC 111003 || || || || || | || |||||| | || || |||||||||||||| | ||| Sbjct 5266 CCTTCGATGGAGTCATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGA 5207 Query 111004 GTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTG 111063 || || |||||||| | || |||| ||||| |||| || || ||||| |||| Sbjct 5206 GTACCTGCATTGAACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTG 5147 Query 111064 TATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCAT 111119 || | || || | || | ||| |||| || ||||||| |||||| ||||| Sbjct 5146 TAAGACTCAAGAACTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCAT 5091 >seq116 Length=77448 Score = 131 bits (144), Expect = 2e-25 Identities = 313/464 (67%), Gaps = 17/464 (4%) Strand=Plus/Minus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 ||| | |||||| ||||| || || | || ||| || | || ||| | | ||| || Sbjct 74007 CTTTCTATCGAACCGACCGGGACGTAATAAAGCGGAGTCCAAAACATCAGCTCTGTTGGT 73948 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCA-TTGTCG--AAACCGTCCATTTCTGTGAGAAG 11615 | |||||| || |||| | || ||| ||| | ||||| |||||||| || | Sbjct 73947 ACCGGCAA-GA--ACAACGACATAATCACTTGAAGTGAAACCATCCATTTCAACAAGCAA 73891 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGCCGAACG 11669 |||||| | || | |||||||||||||| |||| | |||| | || || | Sbjct 73890 CTGGTTCAATGTGTTCTCACGCTCATCGTTACCACCCGAGGCCTTACC-CTTG--GATCT 73834 Query 11670 CTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 | |||||||| ||| ||||| ||||| || || ||||| | ||| || |||| || Sbjct 73833 CGACTTACCGATAGCATCAATTTCATCAATAAACACGATCGATGGTGCATTTTCACGGGC 73774 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 | || | |||||| ||||| || || ||||| || ||||| |||||||| | Sbjct 73773 AGTCTTAAATAATTCACGAACACGGGATGCACCGACACCGACAAACATTTCAACGAATTC 73714 Query 11790 TGCGGCAGAACACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | | ||| || |||| ||| |||||| | || ||| || | ||| || || | Sbjct 73713 GGAACCGGAA-ACAGAATAGAATGGAACACCGGCCTGACCGGCAGTAGCTTTGGCAAGCA 73655 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCAC 11908 ||||||||| |||||||||| ||||| | | || ||||| || ||||||||||| Sbjct 73654 AAGTCTTACCGGTACCAGGTGGACCAGACAAGATAGCACCACGAGGAATCTTGGCACCCA 73595 Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 || ||| || || || | ||| | ||||| |||| |||| Sbjct 73594 ATCTTTCGTAACGTTCTGGATGCTTCAAGAAGTTGACAAACTCC 73551 >seq113 Length=85132 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA--CGTGCCTGT 11733 ||| | ||| || |||||||| ||||| | ||||| || || || | |||| Sbjct 19619 ACCAATAGCATCGATCTCATCAATGAAGATGATACTAGG--GGCCAGCTTTCTTGCCGTG 19562 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 | || | ||||| ||||| || |||||||| || ||||| |||||||| | | Sbjct 19561 GCAAATAAGTCACGAACACGAGATGCACCAACACCGACAAACATTTCAACGAATTCGGAA 19502 Query 11794 GCAGAACACTGAATG-AAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAGAG 11851 | ||| || ||| | ||||||||| || ||||| || | || || | || || | || Sbjct 19501 CCGGAA-ACAGAAAGGAAGGGAACACCAGCTTCACCGGCAGTTGCCTTG-GCAAGCAAAG 19444 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||||| ||||| || | |||| | || ||| ||||| || ||||||||||| Sbjct 19443 TCTTACCAGTACCTGGAGGTCCAGACAAAATGGCACCACGAGGAATCTTGGCACC 19389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974682166200