Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq115 268 1e-66 seq116 84.2 3e-11 >seq115 Length=359903 Score = 268 bits (296), Expect = 1e-66 Identities = 1114/1730 (64%), Gaps = 51/1730 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| || ||||| || || | ||||| | || | ||||| |||| | ||| Sbjct 6799 TAGTACATACCAGTCTTAAGACCCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTA 6740 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCA-ATGAAGCGA 105712 ||| ||||| || || || |||||| ||| ||| | | || ||| | | Sbjct 6739 CCCATAGTTGGGGATTGCAAATGAATATTCATGGACTGTGATT---GACAGATGTATGCA 6683 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 || | | || ||||||||||||||| ||| ||| ||||| || || || || Sbjct 6682 CCTCTGTCGGCAGCCATATCAATGACAGATTTCTGTGAGATCTCCCAAACGGTACGATAC 6623 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACC 105832 | ||||||| | ||||| | || || | || || || ||||| |||| | Sbjct 6622 AATTTCTTGAATTTCTCTGGCACATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATG 6563 Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 || | |||||||| | || ||| | ||| || | ||| || || | | || Sbjct 6562 ATAAAGTCCTTCATTGCATTACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAA 6503 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 || |||||| ||||| || || | |||||| |||||||||| | ||| | Sbjct 6502 GGATTAACAATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAAT 6443 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || || || ||||| || | ||||| || || | || || || ||||||||||||||| Sbjct 6442 GGCTCGAAACATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCC 6383 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT---CCTTGAGAACATCCCAG 106069 | || | || | | | ||||| |||| | || |||| | |||||||| Sbjct 6382 AATAACAACGAATTCCTCA-ATCCTTT--CTTGGCGACTTGAGCCTTTAAGTCATCCCAG 6326 Query 106070 TCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACG 106127 || | || | |||||||| |||| |||||||| ||||||| | |||| || | Sbjct 6325 TCCCAAA-GATCGGTTGGTTTCTTATTCC-ACATATCATATTGAAGGATACCTTTAGATG 6268 Query 106128 TGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCT 106187 || || || || |||| ||||| ||||| | |||| | || ||| | | Sbjct 6267 CTGGCGATCCTTCGTATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTT 6208 Query 106188 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 106247 ||| | || || || | || |||||||| || ||||| || ||||| || Sbjct 6207 CCAATGCAGCATGGTATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTC---TG 6151 Query 106248 AA---TCAAATGCGTAG-CG--GCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 106301 | || || | |||| || ||| || || || || || |||||||| | ||| | Sbjct 6150 GACTCTCGAACG-GTAGACGAAGCATGAAGAAAGTA--TCTGCAAGACCTTGGATACCGA 6094 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTT 106360 | |||||||||| | || |||||| || || || || ||| ||| ||||| | || Sbjct 6093 TAGCAATAGGTCTATTTCTCATATTCGAATTACGGGCC-TCTGGAACTGGATAGTAGTTC 6035 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 ||||| || |||| ||| | || ||||||| ||| ||||||| ||| | ||| ||| Sbjct 6034 CTGTCTATAACTCTGTTCAAGTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCA 5975 Query 106421 TAATCAAA--AGTGCGAGT-CTCTTC--ATTGACATACTT-TGGAAGGGCGATTGATGCC 106474 | | || | ||| | ||| || ||| | | | |||||| ||| ||| Sbjct 5974 AAGTTGAACCAAGACGATTTCTCATCTGATTCAACGAATGCTGGAAGACAGATATTAGCC 5915 Query 106475 AAATTGCAAACAGC--CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 ||||| || ||| | | ||| | | | | ||| || | || || || |||| Sbjct 5914 AAATTACAGACACCAACTTCTTTTGGTGAG--GAGTATTCAACAACCTCACAGCATAAGT 5857 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 |||| |||||| || || | ||||||||| ||||||||| |||| || ||||| |||| Sbjct 5856 TGGATGACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGT 5797 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCG 106651 ||| |||| | || || || || || || || | || | ||| | ||| | | | Sbjct 5796 AGATCATGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTT 5737 Query 106652 GCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCA 106711 | | || | ||| | | | || || ||| || || || ||||| | ||| Sbjct 5736 GTGCCTTG-ACAGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCG 5678 Query 106712 AACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCAT 106771 ||||| ||||| | ||||| || || || || | || |||| | || |||| Sbjct 5677 AACTCATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCAT 5618 Query 106772 TGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGA 106831 ||||| || || || |||||||||||||| || |||||||| || | || || | | Sbjct 5617 GGACCATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAA 5558 Query 106832 TCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATA 106891 || | | | |||||| | ||| ||||| | || | || | ||| || | |||| Sbjct 5557 TCACGGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATA 5498 Query 106892 TCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCT 106945 || || ||||| || || | |||||| || || | || ||||| ||| || Sbjct 5497 TCTGCATGCCAAGGTTCCAAATAGACGGCAATGGCACC---AGGACGCTTGTTACCACCT 5441 Query 106946 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 107005 |||| ||||| | || || ||| || || |||| ||| ||||| ||||||| || Sbjct 5440 TGATCGACATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAA 5381 Query 107006 TGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCA 107065 |||||| || || ||| || | | || | | | |||||| ||||| || Sbjct 5380 GTACCATTGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCG 5321 Query 107066 ATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTG 107125 ||||| || || || || ||| || |||| | | | ||| | |||||||| | | Sbjct 5320 ATACCACCGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCG 5261 Query 107126 ATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCA 107185 || ||||| || || |||| | | ||| || |||||||| ||||| || ||||| Sbjct 5260 ATGGAGTCATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCT 5201 Query 107186 GCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTC 107245 |||||||| | |||||||| || || |||| || || ||||| || ||| | | Sbjct 5200 GCATTGAACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGAC 5141 Query 107246 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 || | || | ||| || || ||||| || | ||| |||||||| Sbjct 5140 TCAAGAACTTTAGGAATATCACTACCATGGATACCAACGGCAACACGCAT 5091 >seq116 Length=77448 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||| |||||||| || || || ||||| |||||| ||||| | | ||| | Sbjct 73820 GCATCAATTTCATCAATAAACACGATCGATGGTGCATTTTCACGGGCAGTCTTAAATAAT 73761 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || ||||| | || || ||||| |||||||| || || || | | ||||| | Sbjct 73760 TCACGAACACGGGATGCACCGACACCGACAAACATTTCAACGAATTCGGAACCGGAA-AC 73702 Query 9492 TGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | || ||| || ||| | | ||| ||| | ||| ||| || | ||||||||| || Sbjct 73701 AGAATAGAATGGAACACCGGCCTGACCGGCAGTAGCTTTGGCAAGCAAAGTCTTACCGGT 73642 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||| || ||| | | || ||||| || ||||||||||| || Sbjct 73641 ACCAGGTGGACCAGACAAGATAGCACCACGAGGAATCTTGGCACC 73597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979479917960