Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq117 122 1e-22 >seq117 Length=74469 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || ||| |||| ||||||||||||| | ||| | || || || || |||||| | ||| Sbjct 17304 ATCGGTAAAGGTTACTATGGAACCAAGATGCCCGCCGTGATTCAACGTAACGTTATGGAG 17245 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 ||||| |||||||| || || || || ||||| || || | || ||||| |||||| Sbjct 17244 AATCCAGCCTGGTACACTTCGTATACGCCATATCAGGCCGAAGTGTCCCAGGGTAGATTG 17185 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 ||||| || | || | |||||| | |||| || | || || || || | || || Sbjct 17184 GAAGCCTTGCTTAACTTCCAAACCGTGATCAGTGACTTGACGGGTCTGCCTGTCGCCAAT 17125 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || ||||| ||||||| ||||| || || ||||| ||| Sbjct 17124 GCCTCGCTATTGGATGAAGGTACTGCCGCTGCTGAAGCTATG 17083 Score = 104 bits (114), Expect = 3e-17 Identities = 271/406 (67%), Gaps = 18/406 (4%) Strand=Plus/Minus Query 159383 AAAGAAATGTATGTT-TGATACCAGAGTCAG--CACATGGAACTAATCCTGCATCAGCAG 159439 |||||||| | |||| | || |||| |||| ||||||| || |||||||| || || Sbjct 15764 AAAGAAATAT-TGTTCTAATTCCAG--TCAGTGCACATGGTACCAATCCTGCCTCTGCTA 15708 Query 159440 TGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCA 159499 ||||| || | |||||||| || || ||| ||| | || | | ||||| | Sbjct 15707 CTATGGCTGGTTTCAAAGTTGTTCCAGTTAAATGTCTTGAGAACGGAAGTTTGGACATGA 15648 Query 159500 AAGATCTAGAGAA-----GAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGAT 159554 ||||| | ||| | ||| ||| ||| | | | || || | ||||| Sbjct 15647 AAGATATGGAGTCTCAGTGTAAGAAAT-----ATAAAGATAATCTTGCAGCCTTCATGAT 15593 Query 159555 TACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA-CAGATATGTAAGATTG 159613 |||||||||| | || || | || ||| || |||||| | | ||| | || Sbjct 15592 TACATATCCAACAACTTTCGGACTTTTCGAACCAGGTATCAGAACTGCTATCGAC-ATGA 15534 Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTC 159673 | ||| | |||||||||| || ||| | |||||||| || | |||||||| || |||| Sbjct 15533 TCCATAAATATGGTGGTCAAGTTTATATGGATGGTGCTAACATGAATGCACAAGTCGGTC 15474 Query 159674 TAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCT 159733 | | ||| ||| |||||| || || |||||| | ||| | || |||||||||| Sbjct 15473 TTACTTCACCGGCTGATCTTGGTGCGGACGTTTGTCATTTGAACCTTCACAAGACATTCT 15414 Query 159734 GTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | ||||| || || ||||| || || || || || || || |||| Sbjct 15413 GCATTCCTCACGGTGGTGGTGGACCCGGTGTTGGACCAATCTGTGT 15368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588049884235440