Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq115 185 1e-41 seq96 181 1e-40 >seq115 Length=359903 Score = 185 bits (204), Expect = 1e-41 Identities = 552/852 (65%), Gaps = 2/852 (0%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 || |||||||| | ||| | |||||| | ||||||| || || ||||| | ||| Sbjct 5848 TTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATG 5789 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 || || || |||||||| | || | || | || | ||||| | ||||| Sbjct 5788 AATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG 5729 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 | | |||| | | || | ||| ||||| || || || || || || ||||| Sbjct 5728 ACAGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCA 5669 Query 48138 CCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCA 48197 || || |||| | |||||| |||| ||| | | ||| | ||| ||| Sbjct 5668 CCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTT 5609 Query 48198 TTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTT 48257 | || || | |||| || | ||| || |||||||||||| || ||||| | | | Sbjct 5608 TCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCT 5549 Query 48258 CTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGC 48317 || | ||||| || ||| ||| | | || | || || | ||||| |||||| Sbjct 5548 CTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGC 5489 Query 48318 CATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATAT 48377 || ||||| ||||| | || || |||| || || || ||||| |||||||| | |||| Sbjct 5488 CAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATAT 5429 Query 48378 CTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTT 48437 ||||||||| |||| | || | | ||| || | |||||||| || |||||||||| Sbjct 5428 CTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTA 5369 Query 48438 CCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCC 48497 || | ||| || ||| |||| | || ||| || ||||| |||||||| || Sbjct 5368 CCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCG 5309 Query 48498 ATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCT 48557 ||||||| |||| ||| ||| | || | ||||| || || ||||| || |||||| Sbjct 5308 GTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCT 5249 Query 48558 ATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAAT 48617 |||| | | ||||| |||||| || || | ||| |||| ||| || || Sbjct 5248 TTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAG 5189 Query 48618 GTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAA 48677 ||||| || ||||| | || | | || | | || || | |||| ||| | Sbjct 5188 GTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTA 5129 Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 ||||| | ||| ||||| | | |||||||| | | || |||||||| || Sbjct 5128 GGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCG 5069 Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797 | | ||| || ||| | | | |||||| |||||| ||||| ||||| ||||| Sbjct 5068 GCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAA 5009 Query 48798 TTGTA--TGAAA 48807 ||||| ||||| Sbjct 5008 TTGTAGTTGAAA 4997 >seq96 Length=143779 Score = 181 bits (200), Expect = 1e-40 Identities = 414/616 (67%), Gaps = 18/616 (3%) Strand=Plus/Plus Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCC 48251 |||||| |||| ||||| ||||||||| ||||| ||||| | || ||||| || | Sbjct 92276 TCATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGC 92335 Query 48252 CTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCA 48311 || | | | |||||| |||||| |||| || |||| || | || ||||||| ||| Sbjct 92336 CTGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCT 92395 Query 48312 GCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCT 48371 | |||||||||||||||||| ||| | ||||| | |||||| || |||||||| Sbjct 92396 GAGTGCCATGGTTCTAAATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATCA 92455 Query 48372 ATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCA 48431 | |||| | | | | | |||| |||| |||||| ||||| ||| | ||| | ||| Sbjct 92456 ACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCCA 92515 Query 48432 TTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCA 48491 || || || |||||||| |||| ||||| | ||||||||| || || |||||| Sbjct 92516 TTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAATGTGCATCCCAATACCA 92575 Query 48492 CC---TGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548 || |||| || || || | |||||| | || ||| | | ||||| || | Sbjct 92576 CCAGATGCC---TTGGAAATCATAGCACATTTGTGAACGGTCTTGAATATTCCGTCCAAC 92632 Query 48549 CTATCATCTATCATAT-TTAATAGAAAACAACTAGACATTTGCGG--ATGACAAGTTCCT 48605 |||| || ||| | | || || || || | ||||| || | ||||| Sbjct 92633 GAATCA-CTTTCAAGTGCCACTAAGAAGCACGATGATAAATGCGGGAATTCC--GTTCCA 92689 Query 48606 GAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTT 48665 | |||||| ||||| || |||||||||| || | |||| || | | | || | Sbjct 92690 GCATTAAACAATGTCGGTGATGCATGAAGAAGATACTTCTGAGACATTAGGTGGTAACTC 92749 Query 48666 TCAATAACAGAATCTA---TATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722 | ||| ||| ||| | ||||| | ||| | | || || || | |||||| | | Sbjct 92750 TGTATAGCAGCATCCAAGTTATCC---TCATGAAGAGATAGAGCCACTCTCATTAATAGA 92806 Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782 ||||| ||| ||||| ||| ||| | || | |||||||||| | || | |||| Sbjct 92807 TATTGTGGTGTTTCATGCGGTTTACCATTCACCTTAAGAAGATATGATCTCTCTAGTGTT 92866 Query 48783 TTAAAACCAAAATAGT 48798 |||| |||||||||| Sbjct 92867 CTAAATCCAAAATAGT 92882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107542281560