Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq115 185 1e-41
seq96 181 1e-40
>seq115
Length=359903
Score = 185 bits (204), Expect = 1e-41
Identities = 552/852 (65%), Gaps = 2/852 (0%)
Strand=Plus/Minus
Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017
|| |||||||| | ||| | |||||| | ||||||| || || ||||| | |||
Sbjct 5848 TTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATG 5789
Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077
|| || || |||||||| | || | || | || | ||||| | |||||
Sbjct 5788 AATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG 5729
Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137
| | |||| | | || | ||| ||||| || || || || || || |||||
Sbjct 5728 ACAGTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCA 5669
Query 48138 CCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCA 48197
|| || |||| | |||||| |||| ||| | | ||| | ||| |||
Sbjct 5668 CCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTT 5609
Query 48198 TTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTT 48257
| || || | |||| || | ||| || |||||||||||| || ||||| | | |
Sbjct 5608 TCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCT 5549
Query 48258 CTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGC 48317
|| | ||||| || ||| ||| | | || | || || | ||||| ||||||
Sbjct 5548 CTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGC 5489
Query 48318 CATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATAT 48377
|| ||||| ||||| | || || |||| || || || ||||| |||||||| | ||||
Sbjct 5488 CAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATAT 5429
Query 48378 CTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTT 48437
||||||||| |||| | || | | ||| || | |||||||| || ||||||||||
Sbjct 5428 CTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTA 5369
Query 48438 CCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCC 48497
|| | ||| || ||| |||| | || ||| || ||||| |||||||| ||
Sbjct 5368 CCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCG 5309
Query 48498 ATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCT 48557
||||||| |||| ||| ||| | || | ||||| || || ||||| || ||||||
Sbjct 5308 GTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCT 5249
Query 48558 ATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAAT 48617
|||| | | ||||| |||||| || || | ||| |||| ||| || ||
Sbjct 5248 TTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAG 5189
Query 48618 GTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAA 48677
||||| || ||||| | || | | || | | || || | |||| ||| |
Sbjct 5188 GTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTA 5129
Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737
||||| | ||| ||||| | | |||||||| | | || |||||||| ||
Sbjct 5128 GGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCG 5069
Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797
| | ||| || ||| | | | |||||| |||||| ||||| ||||| |||||
Sbjct 5068 GCGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAA 5009
Query 48798 TTGTA--TGAAA 48807
||||| |||||
Sbjct 5008 TTGTAGTTGAAA 4997
>seq96
Length=143779
Score = 181 bits (200), Expect = 1e-40
Identities = 414/616 (67%), Gaps = 18/616 (3%)
Strand=Plus/Plus
Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCC 48251
|||||| |||| ||||| ||||||||| ||||| ||||| | || ||||| || |
Sbjct 92276 TCATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGC 92335
Query 48252 CTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCA 48311
|| | | | |||||| |||||| |||| || |||| || | || ||||||| |||
Sbjct 92336 CTGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCT 92395
Query 48312 GCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCT 48371
| |||||||||||||||||| ||| | ||||| | |||||| || ||||||||
Sbjct 92396 GAGTGCCATGGTTCTAAATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATCA 92455
Query 48372 ATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCA 48431
| |||| | | | | | |||| |||| |||||| ||||| ||| | ||| | |||
Sbjct 92456 ACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCCA 92515
Query 48432 TTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCA 48491
|| || || |||||||| |||| ||||| | ||||||||| || || ||||||
Sbjct 92516 TTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAATGTGCATCCCAATACCA 92575
Query 48492 CC---TGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548
|| |||| || || || | |||||| | || ||| | | ||||| || |
Sbjct 92576 CCAGATGCC---TTGGAAATCATAGCACATTTGTGAACGGTCTTGAATATTCCGTCCAAC 92632
Query 48549 CTATCATCTATCATAT-TTAATAGAAAACAACTAGACATTTGCGG--ATGACAAGTTCCT 48605
|||| || ||| | | || || || || | ||||| || | |||||
Sbjct 92633 GAATCA-CTTTCAAGTGCCACTAAGAAGCACGATGATAAATGCGGGAATTCC--GTTCCA 92689
Query 48606 GAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTT 48665
| |||||| ||||| || |||||||||| || | |||| || | | | || |
Sbjct 92690 GCATTAAACAATGTCGGTGATGCATGAAGAAGATACTTCTGAGACATTAGGTGGTAACTC 92749
Query 48666 TCAATAACAGAATCTA---TATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722
| ||| ||| ||| | ||||| | ||| | | || || || | |||||| | |
Sbjct 92750 TGTATAGCAGCATCCAAGTTATCC---TCATGAAGAGATAGAGCCACTCTCATTAATAGA 92806
Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782
||||| ||| ||||| ||| ||| | || | |||||||||| | || | ||||
Sbjct 92807 TATTGTGGTGTTTCATGCGGTTTACCATTCACCTTAAGAAGATATGATCTCTCTAGTGTT 92866
Query 48783 TTAAAACCAAAATAGT 48798
|||| ||||||||||
Sbjct 92867 CTAAATCCAAAATAGT 92882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562107542281560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |