Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq115 100 5e-16 >seq115 Length=359903 Score = 100 bits (110), Expect = 5e-16 Identities = 456/717 (64%), Gaps = 7/717 (1%) Strand=Plus/Minus Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCA 221840 |||| || || || || | || |||||| ||| | || ||| || ||||||| || Sbjct 5850 ACTTAATAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCA 5791 Query 221841 TAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGC 221900 | || ||| ||||| || || ||| ||| ||||| | ||| || | | || Sbjct 5790 TGAATGGAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCT 5731 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACT 221960 | || || || | | ||| || ||||||||| ||| || | | || |||| Sbjct 5730 TGACAGTTCTTCTACCACGACCTTC---CTTTTCATATTTGGTGTACAATTTTTCGAACT 5674 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 |||||||| | ||| ||||| ||| | || | | || | |||| | Sbjct 5673 CATCACCGTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGAC 5614 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 || |||| || | || |||||| || || || ||||| || || | || | ||| | Sbjct 5613 CATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCAC 5554 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 || | ||| ||| || | ||| ||| | ||| | || || || || || | Sbjct 5553 GGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTG 5494 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 | ||||| || |||| ||||||||| | || || || |||||||| ||||| ||||| | Sbjct 5493 CATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGA 5434 Query 222201 CCATCCTCTC-CAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACC 222258 | || ||| ||| | |||||||| |||| | || | | || || || ||| Sbjct 5433 C-ATA-TCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACC 5376 Query 222259 GTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACC 222318 ||||| || |||||| | || || | | |||| | | ||| |||||||| Sbjct 5375 ATTGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACC 5316 Query 222319 ACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGA 222378 ||||||| ||| || || | ||||| ||| | ||| || ||| || || || || Sbjct 5315 ACCGGCGGTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGA 5256 Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||| || || | | | || ||||| || |||||||||| | | | | || || || Sbjct 5255 GTCATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATT 5196 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 |||| || || || || || ||||| | ||||||| || | ||| | ||| Sbjct 5195 GAACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTC 5139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842721709760