Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq96 138 6e-28
seq115 98.7 5e-16
>seq96
Length=143779
Score = 138 bits (152), Expect = 6e-28
Identities = 297/438 (68%), Gaps = 16/438 (4%)
Strand=Plus/Plus
Query 25924 AACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCAT 25983
|||| | | ||||||||| ||||||||||| | |||||||||| || || || | |||
Sbjct 92287 AACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCCTGGCCCGCAT 92346
Query 25984 TTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGG 26043
|||||| || || ||||||||| | ||||| ||||| || | | |||||||||||||||
Sbjct 92347 TTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTGAGTGCCATGG 92406
Query 26044 TTCTAAATAGATAGCAAAACT---ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100
||||||||| ||| | | ||| ||||| ||| |||||||| || || |
Sbjct 92407 TTCTAAATA---TGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATCAAC--ATAT 92461
Query 26101 TGCAGTTTC---ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157
|| || | | || ||||| | | ||||||||| | |||| | || || |||||
Sbjct 92462 TG-AGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCCATTTGT 92520
Query 26158 GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGC 26217
| ||| | || ||| | | ||| | || | || || || || |||||||
Sbjct 92521 ACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAATGTGCATCCCAATACCACCAGA 92580
Query 26218 CCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACC 26277
|| ||||| ||||| | ||| || | ||| ||||| | | |||||
Sbjct 92581 TGCCTTGGAAATCATAGCACATTTGTGAACGGTCTTGAATATTCCGTCCAACGAATCACT 92640
Query 26278 TTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTT--GTTCCTGAATTAAAT 26335
|| | | | | ||| || || || ||||| |||| || || ||||| | ||||||
Sbjct 92641 TTCAAGTGCCACTAAGAAGCACGATGATAAATGCG--GGAATTCCGTTCCAGCATTAAAC 92698
Query 26336 AATGTCGGTGTAGCATGA 26353
|||||||||| ||||||
Sbjct 92699 AATGTCGGTGATGCATGA 92716
Score = 84.2 bits (92), Expect = 1e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 25019 TCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTA 25078
|| || |||| ||| | ||| | ||| || ||||| || |||||||||||||| ||
Sbjct 91394 TCGCCTGACAGAACCCGTCTAGTATATACATTGGAAGTTAAAGGTTCAAAACATTCGGTA 91453
Query 25079 TTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTC 25138
| ||| || || || ||||| || || || ||||| || || | | |||||||||||
Sbjct 91454 TATCCGAATATCTGTGAAGTTGAAGCCGTGGGCATCAAAGCAACACAGAGCGAATTTCTT 91513
Query 25139 AAACCATATTTAACAATCTCTTGTTTTAA 25167
| |||||| || || || ||||||||
Sbjct 91514 ACACCATACTTCGATATTTCATGTTTTAA 91542
>seq115
Length=359903
Score = 98.7 bits (108), Expect = 5e-16
Identities = 328/505 (65%), Gaps = 8/505 (2%)
Strand=Plus/Minus
Query 25896 AGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACA 25955
|||| ||| ||| | |||||| || || || ||| || | ||| |||||||| |
Sbjct 5631 AGAACAAAGTCCATGGACCATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAA 5572
Query 25956 TTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTA 26015
|| || ||||| | ||||| || ||||| || || || ||| | | ||| |
Sbjct 5571 GAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGA 5512
Query 26016 AGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTT 26075
|||||| || ||||||| ||||| ||||| ||||||| |||| ||| | |
Sbjct 5511 TGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCT 5452
Query 26076 TTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTA 26135
| ||||||||||| || ||||| ||||| ||||| || | ||| |||| |
Sbjct 5451 TGTTACCACCTTGATCGACATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGA 5392
Query 26136 ATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAG 26195
||| | ||| || || || | ||| | || || || | | ||| | ||
Sbjct 5391 TACCATTAGAAGTACCATTGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGA 5332
Query 26196 CATGAATACCGATTCCACCAGCCCATTTTGAAAT---AGCTGCACAATCTGAAACTGTAT 26252
||| |||||||| ||||| || ||| ||||| ||| |||| | ||| ||||
Sbjct 5331 TATGCATACCGATACCACCGGCGGTTTTAGAAATTAAAGC-GCACTGCTTCAAA--GTAT 5275
Query 26253 CGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCG 26312
|| | || |||| ||| ||| ||||||| | | || ||||| ||||| | || |
Sbjct 5274 CGTAGATACCTTCGATGGAGTCATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAG 5215
Query 26313 AATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCA 26372
|| || |||| ||| || || || |||| |||||| || | || | || | ||
Sbjct 5214 GTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACA 5155
Query 26373 -AAGCTGTATAAGTTTCAAGAACTT 26396
|| | | |||| ||||||||||
Sbjct 5154 TGAGGT-TGTAAGACTCAAGAACTT 5131
Score = 89.7 bits (98), Expect = 3e-13
Identities = 99/130 (76%), Gaps = 4/130 (3%)
Strand=Plus/Minus
Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGAT--AAGTTTGAAGTGAATGGTTCAAAACATT 25073
|| || || | |||||||||||| ||||| | ||| || |||||||| || |||||||
Sbjct 6487 AACTCACCGGCCAAAACTCTTCT--TTGATAGATGTTGGATGTGAATGGCTCGAAACATT 6430
Query 25074 CATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAAT 25133
| || | || | || ||||| |||||||| ||||||||| ||| | ||| | |||||
Sbjct 6429 CGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAAT 6370
Query 25134 TTCTCAAACC 25143
| ||||| ||
Sbjct 6369 TCCTCAATCC 6360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039447977425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |