Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq96 138 6e-28 seq115 98.7 5e-16 >seq96 Length=143779 Score = 138 bits (152), Expect = 6e-28 Identities = 297/438 (68%), Gaps = 16/438 (4%) Strand=Plus/Plus Query 25924 AACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCAT 25983 |||| | | ||||||||| ||||||||||| | |||||||||| || || || | ||| Sbjct 92287 AACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATGCCTGGCCCGCAT 92346 Query 25984 TTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGG 26043 |||||| || || ||||||||| | ||||| ||||| || | | ||||||||||||||| Sbjct 92347 TTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATCTGAGTGCCATGG 92406 Query 26044 TTCTAAATAGATAGCAAAACT---ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 ||||||||| ||| | | ||| ||||| ||| |||||||| || || | Sbjct 92407 TTCTAAATA---TGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATCAAC--ATAT 92461 Query 26101 TGCAGTTTC---ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 || || | | || ||||| | | ||||||||| | |||| | || || ||||| Sbjct 92462 TG-AGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCCATTTGT 92520 Query 26158 GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGC 26217 | ||| | || ||| | | ||| | || | || || || || ||||||| Sbjct 92521 ACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAATGTGCATCCCAATACCACCAGA 92580 Query 26218 CCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACC 26277 || ||||| ||||| | ||| || | ||| ||||| | | ||||| Sbjct 92581 TGCCTTGGAAATCATAGCACATTTGTGAACGGTCTTGAATATTCCGTCCAACGAATCACT 92640 Query 26278 TTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTT--GTTCCTGAATTAAAT 26335 || | | | | ||| || || || ||||| |||| || || ||||| | |||||| Sbjct 92641 TTCAAGTGCCACTAAGAAGCACGATGATAAATGCG--GGAATTCCGTTCCAGCATTAAAC 92698 Query 26336 AATGTCGGTGTAGCATGA 26353 |||||||||| |||||| Sbjct 92699 AATGTCGGTGATGCATGA 92716 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25019 TCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTA 25078 || || |||| ||| | ||| | ||| || ||||| || |||||||||||||| || Sbjct 91394 TCGCCTGACAGAACCCGTCTAGTATATACATTGGAAGTTAAAGGTTCAAAACATTCGGTA 91453 Query 25079 TTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTC 25138 | ||| || || || ||||| || || || ||||| || || | | ||||||||||| Sbjct 91454 TATCCGAATATCTGTGAAGTTGAAGCCGTGGGCATCAAAGCAACACAGAGCGAATTTCTT 91513 Query 25139 AAACCATATTTAACAATCTCTTGTTTTAA 25167 | |||||| || || || |||||||| Sbjct 91514 ACACCATACTTCGATATTTCATGTTTTAA 91542 >seq115 Length=359903 Score = 98.7 bits (108), Expect = 5e-16 Identities = 328/505 (65%), Gaps = 8/505 (2%) Strand=Plus/Minus Query 25896 AGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACA 25955 |||| ||| ||| | |||||| || || || ||| || | ||| |||||||| | Sbjct 5631 AGAACAAAGTCCATGGACCATTTTCTTCCACACGCTTCATGAAAAGATCAGGAATCCAAA 5572 Query 25956 TTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTA 26015 || || ||||| | ||||| || ||||| || || || ||| | | ||| | Sbjct 5571 GAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTTACCATGGTTCATCCGGATATCGA 5512 Query 26016 AGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTT 26075 |||||| || ||||||| ||||| ||||| ||||||| |||| ||| | | Sbjct 5511 TGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATAGACGGCAATGGCACCAGGACGCT 5452 Query 26076 TTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTA 26135 | ||||||||||| || ||||| ||||| ||||| || | ||| |||| | Sbjct 5451 TGTTACCACCTTGATCGACATATCTGGCAGTACTGTTGAAGACACGAATCATAGGAATGA 5392 Query 26136 ATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAG 26195 ||| | ||| || || || | ||| | || || || | | ||| | || Sbjct 5391 TACCATTAGAAGTACCATTGGTACCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGA 5332 Query 26196 CATGAATACCGATTCCACCAGCCCATTTTGAAAT---AGCTGCACAATCTGAAACTGTAT 26252 ||| |||||||| ||||| || ||| ||||| ||| |||| | ||| |||| Sbjct 5331 TATGCATACCGATACCACCGGCGGTTTTAGAAATTAAAGC-GCACTGCTTCAAA--GTAT 5275 Query 26253 CGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCG 26312 || | || |||| ||| ||| ||||||| | | || ||||| ||||| | || | Sbjct 5274 CGTAGATACCTTCGATGGAGTCATCTTTCATGGCAACCAAGAAACATGAAGACATCTGAG 5215 Query 26313 AATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCA 26372 || || |||| ||| || || || |||| |||||| || | || | || | || Sbjct 5214 GTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAAGCATGCGTGAAGTAACGTTTAGACA 5155 Query 26373 -AAGCTGTATAAGTTTCAAGAACTT 26396 || | | |||| |||||||||| Sbjct 5154 TGAGGT-TGTAAGACTCAAGAACTT 5131 Score = 89.7 bits (98), Expect = 3e-13 Identities = 99/130 (76%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGAT--AAGTTTGAAGTGAATGGTTCAAAACATT 25073 || || || | |||||||||||| ||||| | ||| || |||||||| || ||||||| Sbjct 6487 AACTCACCGGCCAAAACTCTTCT--TTGATAGATGTTGGATGTGAATGGCTCGAAACATT 6430 Query 25074 CATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAAT 25133 | || | || | || ||||| |||||||| ||||||||| ||| | ||| | ||||| Sbjct 6429 CGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAAT 6370 Query 25134 TTCTCAAACC 25143 | ||||| || Sbjct 6369 TCCTCAATCC 6360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039447977425