Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq117 113 5e-20 >seq117 Length=74469 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || || || ||||| ||||||| ||||| || || || || | || | || Sbjct 17083 CATAGCTTCAGCAGCGGCAGTACCTTCATCCAATAGCGAGGCATTGGCGACAGGCAGACC 17142 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || | || |||| | |||||| | || | || ||||||||||| ||||| || | Sbjct 17143 CGTCAAGTCACTGATCACGGTTTGGAAGTTAAGCAAGGCTTCCAATCTACCCTGGGACAC 17202 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 || || ||||| || || || || |||||||| |||||||| | |||||| || || Sbjct 17203 TTCGGCCTGATATGGCGTATACGAAGTGTACCAGGCTGGATTCTCCATAACGTTACGTTG 17262 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 || || | ||| | ||||||||||||| |||| ||| || Sbjct 17263 AATCACGGCGGGCATCTTGGTTCCATAGTAACCTTTACCGAT 17304 Score = 100 bits (110), Expect = 3e-16 Identities = 268/405 (66%), Gaps = 16/405 (4%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||| || || || || || || || ||||| || || ||||| ||||||||||| || Sbjct 15368 ACACAGATTGGTCCAACACCGGGTCCACCACCACCGTGAGGAATGCAGAATGTCTTGTGA 15427 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || | |||||| || || |||||| ||| ||| | ||||| || |||||| Sbjct 15428 AGGTTCAAATGACAAACGTCCGCACCAAGATCAGCCGGTGAAGTAAGACCGACTTGTGCA 15487 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || |||||||| | ||| || |||||||||| | ||| | || | ||| | Sbjct 15488 TTCATGTTAGCACCATCCATATAAACTTGACCACCATATTTATGGATCAT-GTCGATAGC 15546 Query 138363 TG-TCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | |||||| || ||| || | || ||| | ||||||||||||||| | || Sbjct 15547 AGTTCTGATACCTGGTTCGAAAAGTCCGAAAGTTGTTGGATATGTAATCATGAAGGCTGC 15606 Query 138422 GAGTTCAAATGTATTCATGATTGCTTTC-----TTCTCTAGATCTTTGATGTCTATGTTG 138476 || | | | ||| ||| ||| | ||| | |||||| ||||| | | Sbjct 15607 AAGATTATCTTTAT-----ATTTCTTACACTGAGACTCCATATCTTTCATGTCCAAACTT 15661 Query 138477 CCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGA 138536 || | ||| ||| || || |||||||| | || ||||| ||| |||||| Sbjct 15662 CCGTTCTCAAGACATTTAACTGGAACAACTTTGAAACCAGCCATAGTAGCAGAGGCAGGA 15721 Query 138537 TTAGTTCCATGTG--CTGACTCTGGTATCAGACATACATTTCTTT 138579 || || ||||||| |||| |||| || ||| | |||||||| Sbjct 15722 TTGGTACCATGTGCACTGA--CTGGAATTAGAACAATATTTCTTT 15764 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 139263 CCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCT 139322 || |||| |||||| || | ||||| || | ||||| || | ||||| ||||| Sbjct 16469 CCTTCTGGACCATGGTAAACGGCATACGATGATGCGATATTGGCCAAAAGTGCCTGTGCG 16528 Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382 || |||||||| || || || || | | ||||||||||||||| ||||| | || Sbjct 16529 GTACAGATGTTTGAAGTAGCCTTCTCACGACGAATATGCTGCTCTCTCGTTTGCAAGGCA 16588 Query 139383 AATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATC 139442 | ||| | || ||||| || || ||| || || || | ||| || || ||| Sbjct 16589 AGTCTTAAAGCGGGATTACCAAGTCTATCCTTGGAAATTCCGACCAATCTACCGGGCATC 16648 Query 139443 TTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATA 139502 || | ||| | ||| | | |||||| | |||||||| ||||| ||| | ||||| Sbjct 16649 TTCCGCTTCAAATTGGATTTGACTGCAAAATAGGCAGCATGGGGACCACCGAAACCCATT 16708 Query 139503 GGAATACCAAACCTTTG 139519 || | |||||| || || Sbjct 16709 GGGACACCAAATCTCTG 16725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997104491080