Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq117 113 5e-20
>seq117
Length=74469
Score = 113 bits (124), Expect = 5e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918
||| || || || || ||||| ||||||| ||||| || || || || | || | ||
Sbjct 17083 CATAGCTTCAGCAGCGGCAGTACCTTCATCCAATAGCGAGGCATTGGCGACAGGCAGACC 17142
Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978
|| | || |||| | |||||| | || | || ||||||||||| ||||| || |
Sbjct 17143 CGTCAAGTCACTGATCACGGTTTGGAAGTTAAGCAAGGCTTCCAATCTACCCTGGGACAC 17202
Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038
|| || ||||| || || || || |||||||| |||||||| | |||||| || ||
Sbjct 17203 TTCGGCCTGATATGGCGTATACGAAGTGTACCAGGCTGGATTCTCCATAACGTTACGTTG 17262
Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080
|| || | ||| | ||||||||||||| |||| ||| ||
Sbjct 17263 AATCACGGCGGGCATCTTGGTTCCATAGTAACCTTTACCGAT 17304
Score = 100 bits (110), Expect = 3e-16
Identities = 268/405 (66%), Gaps = 16/405 (4%)
Strand=Plus/Plus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|||| || || || || || || || ||||| || || ||||| ||||||||||| ||
Sbjct 15368 ACACAGATTGGTCCAACACCGGGTCCACCACCACCGTGAGGAATGCAGAATGTCTTGTGA 15427
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302
| || | |||||| || || |||||| ||| ||| | ||||| || ||||||
Sbjct 15428 AGGTTCAAATGACAAACGTCCGCACCAAGATCAGCCGGTGAAGTAAGACCGACTTGTGCA 15487
Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362
|| | || |||||||| | ||| || |||||||||| | ||| | || | ||| |
Sbjct 15488 TTCATGTTAGCACCATCCATATAAACTTGACCACCATATTTATGGATCAT-GTCGATAGC 15546
Query 138363 TG-TCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421
| |||||| || ||| || | || ||| | ||||||||||||||| | ||
Sbjct 15547 AGTTCTGATACCTGGTTCGAAAAGTCCGAAAGTTGTTGGATATGTAATCATGAAGGCTGC 15606
Query 138422 GAGTTCAAATGTATTCATGATTGCTTTC-----TTCTCTAGATCTTTGATGTCTATGTTG 138476
|| | | | ||| ||| ||| | ||| | |||||| ||||| | |
Sbjct 15607 AAGATTATCTTTAT-----ATTTCTTACACTGAGACTCCATATCTTTCATGTCCAAACTT 15661
Query 138477 CCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGA 138536
|| | ||| ||| || || |||||||| | || ||||| ||| ||||||
Sbjct 15662 CCGTTCTCAAGACATTTAACTGGAACAACTTTGAAACCAGCCATAGTAGCAGAGGCAGGA 15721
Query 138537 TTAGTTCCATGTG--CTGACTCTGGTATCAGACATACATTTCTTT 138579
|| || ||||||| |||| |||| || ||| | ||||||||
Sbjct 15722 TTGGTACCATGTGCACTGA--CTGGAATTAGAACAATATTTCTTT 15764
Score = 89.7 bits (98), Expect = 6e-13
Identities = 174/257 (68%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 139263 CCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCT 139322
|| |||| |||||| || | ||||| || | ||||| || | ||||| |||||
Sbjct 16469 CCTTCTGGACCATGGTAAACGGCATACGATGATGCGATATTGGCCAAAAGTGCCTGTGCG 16528
Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382
|| |||||||| || || || || | | ||||||||||||||| ||||| | ||
Sbjct 16529 GTACAGATGTTTGAAGTAGCCTTCTCACGACGAATATGCTGCTCTCTCGTTTGCAAGGCA 16588
Query 139383 AATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATC 139442
| ||| | || ||||| || || ||| || || || | ||| || || |||
Sbjct 16589 AGTCTTAAAGCGGGATTACCAAGTCTATCCTTGGAAATTCCGACCAATCTACCGGGCATC 16648
Query 139443 TTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATA 139502
|| | ||| | ||| | | |||||| | |||||||| ||||| ||| | |||||
Sbjct 16649 TTCCGCTTCAAATTGGATTTGACTGCAAAATAGGCAGCATGGGGACCACCGAAACCCATT 16708
Query 139503 GGAATACCAAACCTTTG 139519
|| | |||||| || ||
Sbjct 16709 GGGACACCAAATCTCTG 16725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578997104491080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |