Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq110 131 3e-25 seq1 120 5e-22 >seq110 Length=92542 Score = 131 bits (144), Expect = 3e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||||||||||| | |||| || | |||| || || |||||| || || | Sbjct 52900 TACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAG 52959 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | | ||||| ||| || || ||||| || ||||| || ||||||||||||||||| | Sbjct 52960 AAAGAGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTG 53019 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | |||||||| ||||| || || || || | ||| || || || |||||||| | Sbjct 53020 GAATTCCTTCCTTATCCTGGATCTTTTGCTTGACATTGTCGATCGTGTCCGAAGACTCGA 53079 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || | || ||||| |||||||| || || || || || |||||||| || Sbjct 53080 CCTCCAAGGTGATAGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 53131 >seq1 Length=504328 Score = 120 bits (132), Expect = 5e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||| ||| |||| || | || | ||| || || || || || Sbjct 435071 ATACCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCA 435130 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||||| || || || || || || || ||||| ||||||||||||||||| Sbjct 435131 GAAAGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGT 435190 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || || || || | ||| ||| || || |||||||| Sbjct 435191 GGGATTCCCTCCTTATCCTGAATCTTCTGCTTGACATTGTCAATGGTGTCAGAAGACTCG 435250 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||||| | || || || ||||| || | || || || || ||||||||| || Sbjct 435251 ACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTCTA 435304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652387023280