Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 134 3e-26 seq110 125 1e-23 >seq1 Length=504328 Score = 134 bits (148), Expect = 3e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||||||||||||| | | | || || || | ||| | ||| || ||| | Sbjct 435063 GTTCAATAATACCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGT 435122 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | |||||||| | |||| | || ||||| || |||||||| || || |||||||||| Sbjct 435123 TGTAATCAGAAAGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTT 435182 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||||||||| ||||| || ||||| || || || | || ||||| || | || | Sbjct 435183 GATCAGGTGGGATTCCCTCCTTATCCTGAATCTTCTGCTTGACATTGTCAATGGTGTCAG 435242 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | || || ||||| | |||||||| ||||| || || || |||| || || |||||| Sbjct 435243 AAGACTCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTC 435302 Query 192539 TA 192540 || Sbjct 435303 TA 435304 >seq110 Length=92542 Score = 125 bits (138), Expect = 1e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||||||||| | | || || || || | |||| || || ||||| ||||||| Sbjct 52900 TACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAG 52959 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | |||| |||| ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 52960 AAAGAGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTG 53019 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || | || ||||| || | || || || || | Sbjct 53020 GAATTCCTTCCTTATCCTGGATCTTTTGCTTGACATTGTCGATCGTGTCCGAAGACTCGA 53079 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || | || || || ||||| || | || |||| || || ||||| || Sbjct 53080 CCTCCAAGGTGATAGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 53131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477742156650