Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq115 168 2e-36 seq96 120 9e-22 seq53 109 2e-18 seq116 86.0 2e-11 >seq115 Length=359903 Score = 168 bits (186), Expect = 2e-36 Identities = 568/881 (64%), Gaps = 15/881 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| |||| ||||||||| | ||| || ||| || || || | |||||| || || Sbjct 5882 GTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCGAGATTCTTTTGATT 5823 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || |||||||||||||| ||||| | ||| |||| || || || || | || || Sbjct 5822 ACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGTTTCAGTTTGGGC 5763 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATT-AATTTGCTTGTTGTATCTGCCTTCCG 155808 |||| ||||| ||| || | | || || | | ||| | | | |||||| Sbjct 5762 CTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACAGTTCTTCTACCA-CGACCTTCCT 5704 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 |||||||| | |||| || | | || |||||||| ||| || ||||| Sbjct 5703 TTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGGAAAGGCCAGGAG 5644 Query 155869 ACTTATCGGGGCAAAACAGCGACCA-----AATTTTATTACCGATTACACGCTCCATAAA 155923 | | || | |||| | ||| ||||| || | ||||||| ||| || Sbjct 5643 CTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCC-----ACACGCTTCATGAA 5589 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG 155983 | |||| ||||| ||| ||| | || | || | ||| || | || || Sbjct 5588 AAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTTACCATG 5529 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 ||| |||| | || | ||| || ||||| | ||| || |||| ||| | || Sbjct 5528 GTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATAGACGGC 5469 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 || |||| | |||| ||||| ||||| ||||| | ||||| | |||||||| Sbjct 5468 AATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGTACTGTTGAAGAC 5409 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 || | ||||||||| |||||||| ||||| |||||||| || ||| | || |||| Sbjct 5408 ACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAATGTATGAGCCAGT 5349 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 | |||| ||||| ||||| | || |||||||| | |||||||||| |||||| Sbjct 5348 AGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGAAATTAAAGCGCA 5289 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 | ||| | ||||| | | |||||||| || || ||||||| ||| | | | | || Sbjct 5288 CTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGCAACCAAGAAACA 5229 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 ||| | ||||||| || || || || ||||| | || |||| ||||| | || Sbjct 5228 TGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAAGCATGCGTGAA 5169 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 || |||||||| | ||| | ||| || || || || | || || || Sbjct 5168 GTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAGGAATATCACTACCATGGAT 5109 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | | || | |||| | ||||||||| | ||| | | || | |||| Sbjct 5108 ACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGGCGACTTTACCGTTGATTCT 5049 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAAT 156501 || | |||| ||||||| ||||| || |||||||||| Sbjct 5048 AAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAAT 5008 >seq96 Length=143779 Score = 120 bits (132), Expect = 9e-22 Identities = 470/733 (64%), Gaps = 11/733 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| |||| |||||| || || || || |||||||| || | ||||| ||||| Sbjct 92008 GTATTCAACAACCTCACAACAAAGATTGGATGATTTGATGGTTCCAAGATTCTGTTGGTT 92067 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 ||||| ||||| ||||| || || |||| | | || || || || || ||| | Sbjct 92068 TGATTTGGCATTACAGGCATCTTTATAGAGAAGGAAAGGTGTACCAGTTTCTGCCTGAGA 92127 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 |||||||| ||||| | | || || || ||||| | ||||| ||| | Sbjct 92128 TATAAGAATCTTCTCCCAGACCTTTCTTGCCTTGATCTGCTTTGTATATCTCTTTTCTGT 92187 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG-GC 155868 |||||| | |||| | || | | ||||| || |||| ||||| || || Sbjct 92188 CTCATACGTTGTATATAATGTATTAAACTTGTCACCCCAAACATCAGAAAGTCCTGGAGC 92247 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928 | | ||| |||| || ||| || | || || | || | | |||||||| | Sbjct 92248 AGT-ATCCTCAGAAAATAGACTCCACATGTCATCACTTTTAACTCTTTTCATAAATAAGT 92306 Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCT 155988 | ||| | ||||| || || | ||| ||| || || | ||| ||||||| Sbjct 92307 CTGGAATCCATAACGCATAAAATAGATGCCTGGCCCGCATTTCTTCCTTGCCATGATTCT 92366 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA-A 156047 | | || || ||||||||| | ||| | || ||| || | ||| ||| | | Sbjct 92367 TTCTAAGATCCAAGAATTCCATTACATCTGAGTGCCATGGTTCTAAATAT---GCACAGA 92423 Query 156048 CTACCATT--CCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 | || | ||| || || || ||||| ||||| ||| ||| || || | Sbjct 92424 TTGCCCCTGGCCTTTTATTTCCCCCTTGATCAACATATTGAGATACACTATCAAAAACCC 92483 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||| |||| ||| ||| | || |||||||| || || ||||| | || |||| Sbjct 92484 TTAGCATTGGAACAATTCCACTAGATGTGCCATTTGTACCTGAAATATAGGTTCCCGATG 92543 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 | |||||| ||| || | ||||||||||| || || ||||| ||| |||| Sbjct 92544 CTCTCACATTACTAATGTGCATCCCAATACCACCAGATGCCTTGGAAATCATAGCACATT 92603 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 | || || ||||| || || || | |||||| ||| | || | || |||||| Sbjct 92604 TGTGAACGGTCTTGAATATTCCGTCCAACGAATCACTTTCAAGTGCCACTAAGAAGCACG 92663 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | ||| || || | |||||||| || || | ||| |||| |||||||| || || Sbjct 92664 ATGATAAATGCGGGAATTCCGTTCCAGCATTAAACAATGTCGGTGATGCATGAAGAAGAT 92723 Query 156343 ACTTATTAGACAT 156355 |||| | |||||| Sbjct 92724 ACTTCTGAGACAT 92736 >seq53 Length=197219 Score = 109 bits (120), Expect = 2e-18 Identities = 118/156 (76%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 || |||||| | || ||| ||||||||| | || || || |||||||| ||||| || Sbjct 173573 CAAAATTTCCTTAAGACGAGGAACACCAAGTGTCACATT---CTTGGACGAGACACCGGC 173517 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 | | ||||| || || || || | ||||| | |||||||||||| ||| || ||||| Sbjct 173516 ATAATGGAACGTGTTAAGGGTCATCTGAGTGGCAGGCTCACCAATAGATTGGGCAGCAAT 173457 Query 301932 CATACCAACCATTTCTCCTGGTGCTACAATAGACTT 301967 | |||||||||||||||||| |||| |||||| Sbjct 173456 GACACCAACCATTTCTCCTGGATTCACAAGAGACTT 173421 Score = 100 bits (110), Expect = 8e-16 Identities = 220/326 (67%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| || ||||| | | || | ||| | ||| ||||| ||||| || Sbjct 172805 ATCATATTGAACCATGATATCTTCTAAAGCTTTCACTAATCTACGTTGAATGTAACCGGT 172746 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||| || || || |||||||| | ||| |||||||| |||||||||||||||| Sbjct 172745 TTCAGCTGTCTTGACGGCAGTATCAATCAAACCTTCACGACCAGCCATAGCATGGAAGAA 172686 Query 302673 TAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 | |||| | ||| | || | ||| | || | ||||| ||||| || ||| Sbjct 172685 CATTTCTTGAGGAGTC-AAACCACGCAA-GTATGAATTTTCAACAAAACCTTTCGACTCA 172628 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 | ||||| || ||| |||||||| |||| | || | || | ||| | |||| Sbjct 172627 GCCGAATAATCATCCTTCGTAAAGTGAGGCAATGATCTATCGGCAAATCCGAAATTGATA 172568 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCA 302850 || || || || ||| ||||||| || | || | | ||| || ||||| || | || Sbjct 172567 CGTTTACCCTCGACGATCTGCTGACCGACACAGGCAGACATTTGGGAAATGTTAATATAG 172508 Query 302851 CTGCCCTTGGAGCCAGCATTTACCAT 302876 || || || || ||| | ||||| Sbjct 172507 GAACCTTTAGAACCTGCAGTCACCAT 172482 Score = 87.8 bits (96), Expect = 5e-12 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | ||| | |||||| |||||||| || ||||| || ||||| || | ||| | Sbjct 171731 TTGAGGGACATGCATATTCATTTCATCACCATCGAAATCGGCGTTATAAGGAGTAGTGAC 171672 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | || ||| || | |||||| | | || ||| ||||| |||||||||||||||| Sbjct 171671 AGAAAGGTTGATTCTGAAAGT-TGAGAATGG--CATCACACGAACTTTATGACACATCAT 171615 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGTTTAATACATG 303806 |||||| | || | || || || | |||||| | || || || || | | | ||| Sbjct 171614 GGACATTTTATGCAAAGAAGGTTGTCTATTGAACAAGACAGGATCTCCATCCATCAAATG 171555 Query 303807 ACGATGAACCTT 303818 ||| | |||||| Sbjct 171554 ACGCTCAACCTT 171543 >seq116 Length=77448 Score = 86.0 bits (94), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||| | |||||||||||| ||||| || | | | || | ||||| | ||| | Sbjct 73829 TTACCGATAGCATCAATTTCATCAATAAACACGATCGATGGTGCATTTTCACGGGCAGTC 73770 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||||||| | ||||||||||| || | ||| ||| ||||||| || ||||| ||| Sbjct 73769 TTAAATAATTCACGAACACGGGATGCACCGACACCGACAAACATTTCAACGAATTCGGAA 73710 Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 |||| || |||| ||||| ||| || | || || || | || || | || Sbjct 73709 CCGGAAAC-AGAATAGAATGGAACACCGGCCTGACCGGCAGTAGCTTTGGCAAGCAAAGT 73651 Query 289206 CTTACCTGTTCCAGGTGGTCC 289226 |||||| || |||||||| || Sbjct 73650 CTTACCGGTACCAGGTGGACC 73630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814224478323