Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq110 141 8e-29 seq115 91.5 1e-13 >seq110 Length=92542 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || |||| || || || ||||| ||||| || | || || || | | Sbjct 53129 GATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACTATCACCTTGGAGGTCGAGTCTTC 53070 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||| || || |||||||| || || ||||| Sbjct 53069 GGACACGATCGACAATGTCAAGCAAAAGATCCAGGATAAGGAAGGAATTCCACCTGATCA 53010 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||||| || |||||| |||| ||| |||| | || ||||| || Sbjct 53009 ACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACTCTTTCTGATTACAA 52950 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || |||||||| ||| ||||| | || || Sbjct 52949 TATTCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGG 52902 >seq115 Length=359903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 395/616 (64%), Gaps = 19/616 (3%) Strand=Plus/Minus Query 139402 ACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTA 139461 || ||| ||||||| ||||| |||||||| | ||| | |||||| || || | | Sbjct 5602 ACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATC 5543 Query 139462 TCTTCCGAACCCATGTTACGTTTC-ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGG 139520 |||||| ||| ||| | | | || | | |||||| || | || || ||||| || Sbjct 5542 TCTTCCTTACC-ATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGG 5484 Query 139521 TTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTAC 139577 ||||| ||||| ||| || || || || ||| |||||||||||||| | || | Sbjct 5483 TTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCTGGC 5424 Query 139578 AGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGG----TGC 139633 || | | ||||| || || | ||| || | ||| | | || || |||| ||| Sbjct 5423 AGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGC 5364 Query 139634 TACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAA 139693 | | ||| | | || ||| || | || ||| | || || ||||| || ||| | Sbjct 5363 AATGTATGAGCCAGT----AGCACGAATGTTATGGATATGCATACCGATACCACCGGCGG 5308 Query 139694 ATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCC 139752 ||| || |||||| |||| | || | || || ||||| |||||| ||| ||| || Sbjct 5307 TTTTAGAAATTAAAGCGCACT-GCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCT 5249 Query 139753 TGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGA 139812 | ||| | |||| || ||||| || | || ||| || || || |||| Sbjct 5248 TTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAG 5189 Query 139813 GTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTC 139872 || || || |||||||| |||| ||||| | | ||| | || | | | Sbjct 5188 GTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTA 5129 Query 139873 ACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCG 139932 |||||| || || |||||||| || | || |||||||| | ||| || | ||| Sbjct 5128 GGAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCG 5069 Query 139933 GCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGT 139990 || || || | |||| | || ||| ||||| || | || ||| | || || | Sbjct 5068 GCGACTTTACCGTTGATTCTAAGCAAATATGACCGT--TCCAACGTTTTGAAACCGAAAT 5011 Query 139991 ACCTATAGTTGAAATC 140006 | | ||||||||||| Sbjct 5010 AATTGTAGTTGAAATC 4995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896593354120