Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq115 197 3e-45 seq96 98.7 2e-15 seq21 86.0 1e-11 >seq115 Length=359903 Score = 197 bits (218), Expect = 3e-45 Identities = 570/867 (66%), Gaps = 19/867 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||| ||||||||||| | ||||| | ||||| ||| | |||| || | || Sbjct 5010 TATTTCGGTTTCAAAACGTTGGAACGGTCATATTTGCTTAGAATCAACGGTAAAGTCGCC 5069 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT--- 110420 || | ||||| || | | | |||||||| ||||||| ||||| ||||||| Sbjct 5070 GAGAGACCTCAGCATTTACTGATGCGTGTTGCCGTTGGTATCCATGGTAGTGATATTCCT 5129 Query 110421 AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCT 110480 |||| || |||| | ||| | | | |||| | | |||||| | || Sbjct 5130 AAAG---TTCTTGAGTCTTACAACCTCATGTCTAAACGTTACTTCACGCATGCTTCACCA 5186 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAAT 110539 ||| | || || ||||| ||| | || || || |||| || |||||| | | || Sbjct 5187 ACCTTGTTCAATGCAGGTACTCCTAGACCTCAGATGTCTTCATG-TTTCTTGGTTGCCAT 5245 Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTT--ATTTCT 110597 || ||||| || || |||||||| || ||| || || ||| | ||| ||| |||||| Sbjct 5246 GAAAGATGACTCCATCGAAGGTATCTACGATACT-TTGAAGCAG-TGCGCTTTAATTTCT 5303 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 |||| | | || || || ||||| || | ||| | ||||| | | || || | || Sbjct 5304 AAAACCGCCGGTGGTATCGGTATGCATATCCATAACATTCGTGCTACTGGCTCATACATT 5363 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 ||| | || ||| |||| | ||| | |||| ||| | | ||||||||| ||| Sbjct 5364 GCAGGTACCAATGGTACTTCTAATGGTATCATTCCTATGATTCGTGTCTTCAACAGTACT 5423 Query 110718 GCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 || | |||||| ||||||||||| ||| | ||| | |||| ||||| | ||| Sbjct 5424 GCCAGATATGTCGATCAAGGTGGTAACAAGCGTCCTGGTGCCATTGCCGTCTATTTGGAA 5483 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 ||||||||| ||||||| || || ||| | || | || | || || || ||||| Sbjct 5484 CCTTGGCATGCAGATATCTTCGATTTCATCGATATCCGGATGAACCATGGTAAGGAAGAG 5543 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 ||||| |||||||| || || | |||||| | ||| | |||||||| ||||| Sbjct 5544 ATTAGAGCCCGTGATTTGTTCCCAGCTCTTTGGATTCCTGATCTTTTCATGAAGCGTGTG 5603 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 |||||||||| ||| || | | | ||| | ||||||| || || ||||| Sbjct 5604 GAAGAAAATGGTCCATGGACTTTGTTCTCACCTTCTGAAGCTCCTGGCCTTTCCGATGTC 5663 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 || || | ||||| ||| | | ||| ||||||||||| ||||| | | || Sbjct 5664 TACGGTGATGAGTTCGAAAAATTGTACACCAAATATGAAAAGGAAGGTCGTGGTAG--AA 5721 Query 111015 CAAATTCCA--GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072 || | || || ||| | ||||||| | || | || | ||| ||||||||| | Sbjct 5722 GAACTGTCAAGGCACAAAAGCTTTGGTATCAGATTTTGGAGGCCCAAACTGAAACTGGTA 5781 Query 111073 CTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAA 111132 |||| | || | || |||||| | ||| | || |||||||| |||| | || | Sbjct 5782 CTCCATTCATGATCTACAAAGATGCTTGTAACAGAAAGAGTAATCAAAAGAATCTCGGTA 5841 Query 111133 CAATTAAGTCTAGTAATTTGTGCTGTG 111159 | |||||||| || || ||||||| Sbjct 5842 CTATTAAGTCATCCAACTTATGCTGTG 5868 >seq96 Length=143779 Score = 98.7 bits (108), Expect = 2e-15 Identities = 311/474 (66%), Gaps = 21/474 (4%) Strand=Plus/Minus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG---CAAAATATGTGAATCAAGG 110737 |||| ||||||||||| |||| || || || | || | ||||||| ||||||| Sbjct 92503 TGGAATTGTTCCAATGCTAAGGGTTTT---TGATAGTGTATCTCAATATGTTGATCAAGG 92447 Query 110738 TGGTAAGAGAAATGGCTCATTTGCTATC------TATCTCGAACCTTGGCATTCAGATAT 110791 || | | ||| ||| || || ||| ||| | ||||| ||||| |||||| | Sbjct 92446 GGG--AAATAAAAGGC-CAGGGGCAATCTGTGCATATTTAGAACCATGGCACTCAGATGT 92390 Query 110792 ATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTT 110851 | | |||||||| || ||| | || ||||| || |||||| | || | || | Sbjct 92389 AATGGAATTCTTGGATCTTAGAAAGAATCATGGCAAGGAAGAAATGCGGGCCAGGCATCT 92330 Query 110852 ATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTG 110911 ||||||||| | |||||| |||| ||||| |||||| | ||| || ||| |||||| Sbjct 92329 ATTTTATGCGTTATGGATTCCAGACTTATTTATGAAAAGAGTTAAAAGTGATGACATGTG 92270 Query 110912 GTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGA 110971 | ||| | | | || | |||| || || |||||||| | || | ||||| | Sbjct 92269 GAGTCTATTTTCTGAGGATACTGCTCCAGGACTTTCTGATGTTTGGGGTGACAAGTTT-A 92211 Query 110972 AGACCTT-TACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAG 111030 | || || || || ||||| | |||| | | | || || || || |||| Sbjct 92210 ATACATTATATACAACGTATGAGACAGAAAAGAGATATACAAAGCAGAT--CAAGGCAAG 92153 Query 111031 AA--CTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTA 111088 || | ||| || || ||| ||| || | |||||||| || |||| || | || Sbjct 92152 AAAGGTCTGGGAGAAGATTCTTATATCTCAGGCAGAAACTGGTACACCTTTCCTTCTCTA 92093 Query 111089 TAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTC 111142 ||||||| |||| |||||| || ||| |||| | ||||| || || || Sbjct 92092 TAAAGATGCCTGTAATGCCAAATCAAACCAACAGAATCTTGGAACCATCAAATC 92039 >seq21 Length=245137 Score = 86.0 bits (94), Expect = 1e-11 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 279873 TGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGG 279932 ||||||| || ||||| || || || || || | | | | |||| || ||||| | Sbjct 215881 TGGATGGATTCAAACCATCCCAACGGAAAATCTTGTACGGATGTTATAAGAGAAACCTAA 215822 Query 279933 TAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATC 279992 | |||||| ||| | ||||| | ||||||| || |||| || |||||||||| | Sbjct 215821 GAGGTGAAATTAAGGTTTCCCAGTTGGAAGGTTATATTGCAGAGCACACAGGTTATCACC 215762 Query 279993 ACGGTGAAGCGTCTCTTCAAGGTG-CTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCA 280051 | ||||| || ||| || | | | ||| | || | ||||||||||| | | ||| Sbjct 215761 ATGGTGACGCATCT-TTAACCCAGACCATTATTGGATTGGCCCAAGATTTCGTCGGTTCC 215703 Query 280052 AACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTC 280092 ||||| | ||| |||||| ||| ||||| |||||||| Sbjct 215702 AACAATCTGAATTTGCTTTTCCCACATGGTGGTTTTGGTTC 215662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810078119019