Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq115 197 3e-45
seq96 98.7 2e-15
seq21 86.0 1e-11
>seq115
Length=359903
Score = 197 bits (218), Expect = 3e-45
Identities = 570/867 (66%), Gaps = 19/867 (2%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
||||| ||||||||||| | ||||| | ||||| ||| | |||| || | ||
Sbjct 5010 TATTTCGGTTTCAAAACGTTGGAACGGTCATATTTGCTTAGAATCAACGGTAAAGTCGCC 5069
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT--- 110420
|| | ||||| || | | | |||||||| ||||||| ||||| |||||||
Sbjct 5070 GAGAGACCTCAGCATTTACTGATGCGTGTTGCCGTTGGTATCCATGGTAGTGATATTCCT 5129
Query 110421 AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCT 110480
|||| || |||| | ||| | | | |||| | | |||||| | ||
Sbjct 5130 AAAG---TTCTTGAGTCTTACAACCTCATGTCTAAACGTTACTTCACGCATGCTTCACCA 5186
Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAAT 110539
||| | || || ||||| ||| | || || || |||| || |||||| | | ||
Sbjct 5187 ACCTTGTTCAATGCAGGTACTCCTAGACCTCAGATGTCTTCATG-TTTCTTGGTTGCCAT 5245
Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTT--ATTTCT 110597
|| ||||| || || |||||||| || ||| || || ||| | ||| ||| ||||||
Sbjct 5246 GAAAGATGACTCCATCGAAGGTATCTACGATACT-TTGAAGCAG-TGCGCTTTAATTTCT 5303
Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657
|||| | | || || || ||||| || | ||| | ||||| | | || || | ||
Sbjct 5304 AAAACCGCCGGTGGTATCGGTATGCATATCCATAACATTCGTGCTACTGGCTCATACATT 5363
Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717
||| | || ||| |||| | ||| | |||| ||| | | ||||||||| |||
Sbjct 5364 GCAGGTACCAATGGTACTTCTAATGGTATCATTCCTATGATTCGTGTCTTCAACAGTACT 5423
Query 110718 GCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774
|| | |||||| ||||||||||| ||| | ||| | |||| ||||| | |||
Sbjct 5424 GCCAGATATGTCGATCAAGGTGGTAACAAGCGTCCTGGTGCCATTGCCGTCTATTTGGAA 5483
Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834
||||||||| ||||||| || || ||| | || | || | || || || |||||
Sbjct 5484 CCTTGGCATGCAGATATCTTCGATTTCATCGATATCCGGATGAACCATGGTAAGGAAGAG 5543
Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894
||||| |||||||| || || | |||||| | ||| | |||||||| |||||
Sbjct 5544 ATTAGAGCCCGTGATTTGTTCCCAGCTCTTTGGATTCCTGATCTTTTCATGAAGCGTGTG 5603
Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954
|||||||||| ||| || | | | ||| | ||||||| || || |||||
Sbjct 5604 GAAGAAAATGGTCCATGGACTTTGTTCTCACCTTCTGAAGCTCCTGGCCTTTCCGATGTC 5663
Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014
|| || | ||||| ||| | | ||| ||||||||||| ||||| | | ||
Sbjct 5664 TACGGTGATGAGTTCGAAAAATTGTACACCAAATATGAAAAGGAAGGTCGTGGTAG--AA 5721
Query 111015 CAAATTCCA--GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072
|| | || || ||| | ||||||| | || | || | ||| ||||||||| |
Sbjct 5722 GAACTGTCAAGGCACAAAAGCTTTGGTATCAGATTTTGGAGGCCCAAACTGAAACTGGTA 5781
Query 111073 CTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAA 111132
|||| | || | || |||||| | ||| | || |||||||| |||| | || |
Sbjct 5782 CTCCATTCATGATCTACAAAGATGCTTGTAACAGAAAGAGTAATCAAAAGAATCTCGGTA 5841
Query 111133 CAATTAAGTCTAGTAATTTGTGCTGTG 111159
| |||||||| || || |||||||
Sbjct 5842 CTATTAAGTCATCCAACTTATGCTGTG 5868
>seq96
Length=143779
Score = 98.7 bits (108), Expect = 2e-15
Identities = 311/474 (66%), Gaps = 21/474 (4%)
Strand=Plus/Minus
Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG---CAAAATATGTGAATCAAGG 110737
|||| ||||||||||| |||| || || || | || | ||||||| |||||||
Sbjct 92503 TGGAATTGTTCCAATGCTAAGGGTTTT---TGATAGTGTATCTCAATATGTTGATCAAGG 92447
Query 110738 TGGTAAGAGAAATGGCTCATTTGCTATC------TATCTCGAACCTTGGCATTCAGATAT 110791
|| | | ||| ||| || || ||| ||| | ||||| ||||| |||||| |
Sbjct 92446 GGG--AAATAAAAGGC-CAGGGGCAATCTGTGCATATTTAGAACCATGGCACTCAGATGT 92390
Query 110792 ATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTT 110851
| | |||||||| || ||| | || ||||| || |||||| | || | || |
Sbjct 92389 AATGGAATTCTTGGATCTTAGAAAGAATCATGGCAAGGAAGAAATGCGGGCCAGGCATCT 92330
Query 110852 ATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTG 110911
||||||||| | |||||| |||| ||||| |||||| | ||| || ||| ||||||
Sbjct 92329 ATTTTATGCGTTATGGATTCCAGACTTATTTATGAAAAGAGTTAAAAGTGATGACATGTG 92270
Query 110912 GTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGA 110971
| ||| | | | || | |||| || || |||||||| | || | ||||| |
Sbjct 92269 GAGTCTATTTTCTGAGGATACTGCTCCAGGACTTTCTGATGTTTGGGGTGACAAGTTT-A 92211
Query 110972 AGACCTT-TACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAG 111030
| || || || || ||||| | |||| | | | || || || || ||||
Sbjct 92210 ATACATTATATACAACGTATGAGACAGAAAAGAGATATACAAAGCAGAT--CAAGGCAAG 92153
Query 111031 AA--CTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTA 111088
|| | ||| || || ||| ||| || | |||||||| || |||| || | ||
Sbjct 92152 AAAGGTCTGGGAGAAGATTCTTATATCTCAGGCAGAAACTGGTACACCTTTCCTTCTCTA 92093
Query 111089 TAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTC 111142
||||||| |||| |||||| || ||| |||| | ||||| || || ||
Sbjct 92092 TAAAGATGCCTGTAATGCCAAATCAAACCAACAGAATCTTGGAACCATCAAATC 92039
>seq21
Length=245137
Score = 86.0 bits (94), Expect = 1e-11
Identities = 153/221 (69%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 279873 TGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGG 279932
||||||| || ||||| || || || || || | | | | |||| || ||||| |
Sbjct 215881 TGGATGGATTCAAACCATCCCAACGGAAAATCTTGTACGGATGTTATAAGAGAAACCTAA 215822
Query 279933 TAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATC 279992
| |||||| ||| | ||||| | ||||||| || |||| || |||||||||| |
Sbjct 215821 GAGGTGAAATTAAGGTTTCCCAGTTGGAAGGTTATATTGCAGAGCACACAGGTTATCACC 215762
Query 279993 ACGGTGAAGCGTCTCTTCAAGGTG-CTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCA 280051
| ||||| || ||| || | | | ||| | || | ||||||||||| | | |||
Sbjct 215761 ATGGTGACGCATCT-TTAACCCAGACCATTATTGGATTGGCCCAAGATTTCGTCGGTTCC 215703
Query 280052 AACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTC 280092
||||| | ||| |||||| ||| ||||| ||||||||
Sbjct 215702 AACAATCTGAATTTGCTTTTCCCACATGGTGGTTTTGGTTC 215662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186810078119019
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |