Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq115 306 5e-78 seq173 192 8e-44 seq96 145 1e-29 >seq115 Length=359903 Score = 306 bits (338), Expect = 5e-78 Identities = 1142/1772 (64%), Gaps = 30/1772 (2%) Strand=Plus/Minus Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 |||||||| || || || || || | || ||||| | || || || || || Sbjct 6502 GGATTAACAATCTGGAACTCACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAAT 6443 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 || || | | |||| || | |||| ||| |||| || |||||||||||||| |||||| Sbjct 6442 GGCTCGAAACATTCGTTGTAACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCC 6383 Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCC 68886 | || || ||| || | || | | || || | | |||| | | ||| ||| Sbjct 6382 AATAACAACGAATTCCTCAATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCC 6323 Query 68887 CAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATAT 68946 |||||||| | |||| |||||| | ||| ||||| || || || ||| ||| Sbjct 6322 CAAAGATCGGTTGGTTTCTTATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGC 6263 Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | |||||| ||| | ||||||| ||||||||| |||| | | || ||| Sbjct 6262 GATCCTTCGTATGTTGAATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAAT 6203 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| | | || | || || || |||| |||| | || | |||||| |||| ||| Sbjct 6202 GCAGCATGGTATAAAGTCTCAAAGATCTGAATATTCAATTCACGAGCTTCTGGACTCTCG 6143 Query 69067 AATGGATAATGTAAAA-GAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 || || | | | | ||| ||| | |||||| | || || | || ||| | ||||| Sbjct 6142 AACGGTAGACGAAGCATGAAGAAA-GTATCTGCAAGACCTTGGATACCGATAGCAATAGG 6084 Query 69126 TCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 69185 ||||| |||| |||| ||| | || ||||||| ||||| || || | ||||||| Sbjct 6083 TCTATTTCTCATATTCGAATTACGGGCCTCTGGAACTGGATAGTAGTTCCTGTCTATAAC 6024 Query 69186 TTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT-----CA 69240 | | || | || || || || ||| | | | || ||| ||| | || Sbjct 6023 TCTGTTCAAGTTACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCA 5964 Query 69241 AATCG---TC-CATCTATAACAAACATATTCAGTGCTACAGATGCTAG----ATTACAAA 69292 | || || ||||| ||| | || | | |||||| ||| |||||| | Sbjct 5963 AGACGATTTCTCATCTGATTCAACGA-ATGCTGGAAGACAGATATTAGCCAAATTACAGA 5905 Query 69293 CTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGA 69352 | | || || || | | |||| | | ||| |||| || | || | Sbjct 5904 CACCAACTTCTTTTGGTGAGGAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAA 5845 Query 69353 TAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACG 69412 |||| || ||||| | |||||||||||| ||||||| || || ||||| | || || | Sbjct 5844 TAGTACCGAGATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATG 5785 Query 69413 GAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTA 69472 |||||||||||||| | || | || | ||| | ||||| || || | Sbjct 5784 GAGTACCAGTTTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACA- 5726 Query 69473 CGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCC 69530 | |||| || | | | || |||||||||| || || | |||||| ||||| || Sbjct 5725 -GTTCTTCTACCACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACC 5667 Query 69531 CCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATC 69590 | ||||| | |||||| |||| || | | ||| | ||| | ||| || Sbjct 5666 GTAGACATCGGAAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTC 5607 Query 69591 CTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCT 69650 | || || ||||| || ||||| ||||||||||||||| || | ||| | || ||| Sbjct 5606 TTCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCT 5547 Query 69651 ATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCA 69710 | | ||||| || || || | | ||||| || || | ||||| | |||||| Sbjct 5546 AATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCA 5487 Query 69711 TGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCT 69770 ||||| | ||| | || ||| | || || || || || || || ||||| | ||||| Sbjct 5486 AGGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTACCACCTTGATCGACATATCT 5427 Query 69771 GGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCC 69830 |||||| | || |||| | | ||| ||||| ||||||||||| ||||||| || || Sbjct 5426 GGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACC 5367 Query 69831 AGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCAT 69890 | ||| || || | || ||||| ||| ||| | ||| || || || || | Sbjct 5366 TGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGT 5307 Query 69891 TTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTAT 69950 |||||| |||| ||| || | ||||| || || || ||||| || ||| |||||| | Sbjct 5306 TTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTT 5247 Query 69951 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT-AGTTCCCGCATTAAATAATG 70009 |||| || | ||||| |||||| ||| | | || ||| || ||||| || || | Sbjct 5246 CATGGCAACCAAGAAACATGAAGACATCTGAGG-TCTAGGAGTACCTGCATTGAACAAGG 5188 Query 70010 TAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATT 70069 | || || || || ||||| | || ||| | || ||||| | |||| | || Sbjct 5187 TTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTAG 5128 Query 70070 CTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTA 70129 ||||| | ||| || || | || |||||||||| | ||||||||||| || Sbjct 5127 GAATATCACTACCATGGATACCAACGGCAACACGCATCAGTAAATGCTGAGGTCTCTCGG 5068 Query 70130 CCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGT 70189 | |||| || ||| | | || ||||| ||||| ||||| || || ||||| | Sbjct 5067 CGACTTTACCGTTGATTCTAAGCAAATATGACCGTTCCAACGTTTTGAAACCGAAATAAT 5008 Query 70190 TGTA--TGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGT 70247 |||| ||||| ||||| ||||| | || |||| || | | |||||||| | Sbjct 5007 TGTAGTTGAAA--TCTCTATCGTAGTTGATGGCAGAGTTCAACTCATCCTTATGAGCCAT 4950 Query 70248 AACTATATCCATAACAGTAGGT-GAGATAATCGGAGATCGTTTACCATTTTTAGGATTAA 70306 || |||| |||| | | || || || ||| || || | |||||||| Sbjct 4949 GACAATAT-CATAGGTCTCCTTAGAAATCATAGGACATTTCTTCTTGGTCTTAGGATTGT 4891 Query 70307 CATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAAT 70366 || | | | ||| | || ||||| ||| | ||||| || | |||||| || | Sbjct 4890 AGTAATCATAAAGATCCTGGATGACATCGGAAAAGTGCTTTTTGGTCTGCTTGTGCAAGT 4831 Query 70367 TTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGT-A 70425 | || || || | | || || | |||||||||||||||| | ||||| || || | Sbjct 4830 TCGAGATTGCCAAACGTGCAGCCAATGTAGCATAGTCAGGATGCAGAGTAGT-CATGTAA 4772 Query 70426 GCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 ||||| | || |||| ||| |||| || || Sbjct 4771 GCTGCAGTCTCGGCAGTTAAGTTATCCAACTC 4740 >seq173 Length=13397 Score = 192 bits (212), Expect = 8e-44 Identities = 567/863 (66%), Gaps = 12/863 (1%) Strand=Plus/Minus Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 |||||||| || || || || ||| |||| || || || |||||||||||||| ||||| Sbjct 11454 TTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAATGGATTC 11395 Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466 | || || || || | | |||| | | |||||| || ||| || || Sbjct 11394 TTGGCGTTGTAGACCTTCTCACATCCGAGAGAGACCAGCAATCTGTCGGCACAGAAGTCA 11335 Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526 | |||| |||||| || || ||||| || | | ||| |||| || || | Sbjct 11334 ACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACAGGTAATGCGTCTCTC 11275 Query 39527 -AGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACT 39585 |||||||||| | |||| || |||||||| || || || | | | | ||| Sbjct 11274 CAGAAACTCTTCT-CGATATCGACGGCCTCCGTCATGATTCTCTTGATGATGGTCTTACT 11216 Query 39586 CGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATC 39645 || |||||| || ||| || | | |||||||||||| ||||| |||||||| Sbjct 11215 AGGAGGATGCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGTGTGTAGACCCTCATC 11156 Query 39646 TCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCA 39705 || | || | ||||| || ||||| || || ||||| | ||| | ||| || | ||| Sbjct 11155 CCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACCTCTCTTCTTCAACCA 11096 Query 39706 AAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 || || | |||||| ||||| || ||||| | || || | |||||||| ||||| | Sbjct 11095 GAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTCGATGGCTGCAAAGGCAACCAA 11036 Query 39766 TCTCTCTCCGT--AACTTGT-ATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTT 39822 |||||| ||| || || | |||| ||||| | | |||||| || || | Sbjct 11035 TCTCTCGGCGTACAAGGCGTCCTTGTTATTCATCCATCTGTATGCCCACAGTGCCTTTTC 10976 Query 39823 CTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTT 39882 ||| | | || || || || || ||||| || | || | ||| | |||| | Sbjct 10975 CTTGATAGGTGGAATGGTCTCGATGGCATTGAACAAGTAGTCCGATTCCTTCTTATCGGT 10916 Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || || || || | || ||| ||| | || || || || || |||| | ||||| Sbjct 10915 GACGTAGGTCTCAAGCAATAGAGAGTACGTCTCGGAGTGAATATTCTCAACCATGATCTG 10856 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT-CTGAACAAAATCTTTCCGCCA 40001 || ||||| || |||||| |||| | || |||| ||| | || | | | |||| Sbjct 10855 GAAGCCGTAGAATGCTCTTGCCTCAGGCAGCTGAACCTGCTGCATGAAGT-TCTGGGCCA 10797 Query 40002 AATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTA-ATAAAA 40060 | || |||| || | |||||| || || || || ||||| || | | | || || Sbjct 10796 AGTTCTCATCGACCAATCCATCGGATGCTGCGAAGAAGGCCAAGAC-TCTCGATATGAAG 10738 Query 40061 TATTTTTCATCGGGTGTCAAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACT 40117 ||| | || | || ||| | || |||||||| || ||| || || | ||| | Sbjct 10737 TATCTCTCGTTGGCGTTCATTCGGTTGTTCCAGTCTGGGAGATCCTTCGAAAGATCGATC 10678 Query 40118 TCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATAT 40177 ||||| || |||||||| || ||||||||||| |||||||| | ||| ||||| || Sbjct 10677 TCTTCGGCCGTCCAAAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATATCGTCGTAC 10618 Query 40178 TGTATTGGAAAAATAACAAATCT 40200 || || || || || || ||||| Sbjct 10617 TGAATAGGGAACATCACGAATCT 10595 >seq96 Length=143779 Score = 145 bits (160), Expect = 1e-29 Identities = 351/525 (67%), Gaps = 10/525 (2%) Strand=Plus/Plus Query 69347 ATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG--TTACAGGCGTCCTTGTAAAG 69404 ||||||| || || ||||| || || || | ||| | |||||||| || || || || Sbjct 92040 ATTTGATGGTTCCAAGATTCTGTTGGTT--TGATTTGGCATTACAGGCATCTTTATAGAG 92097 Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464 || || || ||||||||||| ||||||| | ||| | ||| || || || Sbjct 92098 AAGGAAAGGTGTACCAGTTTCTGCCTGAGATATAAGAATCTTCTCCCAGACCTTTCTTGC 92157 Query 69465 ATTTATTACGGTCTTGTAA--CGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAAT 69522 || || | | ||||| | ||| ||| | ||||| |||||||| | || Sbjct 92158 CTTGAT--CTGCTTTGTATATCTCTTTTCTGTCTCATACGTTGTATATAATGTATTAAAC 92215 Query 69523 TCATCTCCCCAAACATCATCCAATCCAGGA-CATTCATTTGGACACATCAATGACCACAC 69581 | || |||||||||||| | ||| ||| || | || | | | | ||||| Sbjct 92216 TTGTCACCCCAAACATCAGAAAGTCCTGGAGCAGT-ATCCTCAGAAAATAGACTCCACAT 92274 Query 69582 ATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATC 69641 |||||| ||||||| ||||||||||| || |||||||| | || ||| |||| Sbjct 92275 GTCATCACTTTTAACTCTTTTCATAAATAAGTCTGGAATCCATAACGCATAAAATAGATG 92334 Query 69642 TCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATC 69701 |||| | ||||||| || || ||| ||| ||||||| | || ||||| | ||| Sbjct 92335 CCTGGCCCGCATTTCTTCCTTGCCATGATTCTTTCTAAGATCCAAGAATTCCATTACATC 92394 Query 69702 AGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761 || ||||||||||||| |||| || | || || | ||||||||| || ||||| Sbjct 92395 TGAGTGCCATGGTTCTAAATATGCACAGATTGCCCCTGGCCTTTTATTTCCCCCTTGATC 92454 Query 69762 TATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACC 69821 | ||| | ||| | | || || ||||| |||| ||| ||| ||||| | || Sbjct 92455 AACATATTGAGATACACTATCAAAAACCCTTAGCATTGGAACAATTCCACTAGATGTGCC 92514 Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAAT 69866 |||||| || |||||||| |||| ||| | | ||||||||| Sbjct 92515 ATTTGTACCTGAAATATAGGTTCCCGATGCTCTCACATTACTAAT 92559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907263041560