Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq115 295 8e-75 seq173 82.4 1e-10 >seq115 Length=359903 Score = 295 bits (326), Expect = 8e-75 Identities = 1120/1725 (65%), Gaps = 52/1725 (3%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || | || || |||| || || | |||||||| || ||||| || | Sbjct 6837 TGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGAC 6778 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCA--T 110448 | | |||||| | || | ||||| |||| | ||| ||| ||||| || || | Sbjct 6777 CCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAAT 6718 Query 110449 GAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAA-GCGCCCCCGTTGTGCCGCCATATC 110505 ||| | ||||| ||| ||| ||| ||| | || || | || | || |||||||| Sbjct 6717 GAATA--TTCATGGACTGTGA--TTGACAGATGTATGCACCTCTGTCG-GCAGCCATATC 6663 Query 110506 AATGACATCCTTCATCTTA-ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTG 110564 ||||||| ||| | | | || |||||||| || ||||| | ||||||| | |||| Sbjct 6662 AATGACAGATTTC-TGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTCTCTG 6604 Query 110565 GGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCT 110624 | | || || | |||||||| ||||| |||| | || | |||||||| | | Sbjct 6603 GCACATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGCAT 6544 Query 110625 TGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACT 110684 | ||||| ||| || | ||| ||| || | | | || ||||| |||| Sbjct 6543 TACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAACT 6484 Query 110685 CACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTAT 110744 |||| || | |||||| | |||||||| | |||| |||| || || ||||| || | Sbjct 6483 CACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTTGT 6424 Query 110745 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 110804 ||||| || || | || || || |||||||||||||||| || | || | | Sbjct 6423 AACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAATTCCTCA 6364 Query 110805 GACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTC 110862 || |||| || | |||| | |||||||||| | || | |||||||| Sbjct 6363 ATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAA-GATCGGTTGGTTTC 6305 Query 110863 ACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTC 110922 |||| |||| ||| | ||||| | |||| || || || || || || | ||| Sbjct 6304 TTATTCC-ACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCGTATGTTGA 6246 Query 110923 ATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGT 110982 ||||| ||||| | |||| | || ||| | |||| | || || || | || Sbjct 6245 ATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATAAAGT 6186 Query 110983 TTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA---TCAAATGCGTAG-CG-- 111036 |||||||| || ||||| || ||||| || | || || | |||| || Sbjct 6185 CTCAAAGATCTGAATATTCAATTCACGAGCTTC---TGGACTCTCGAACG-GTAGACGAA 6130 Query 111037 GCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCAT 111096 ||| || || || || || |||||||| | ||| | | |||||||||| | || ||| Sbjct 6129 GCATGAAGAAAGTA--TCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTCAT 6072 Query 111097 ATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGAT 111155 ||| || || || || ||| ||| ||||| | || ||||| || |||| ||| | | Sbjct 6071 ATTCGAATTACGGGCC-TCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAAGT 6013 Query 111156 TTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA--AGTGCGAGT-CT 111212 | ||||||| ||| ||||||| ||| | ||| ||| | | || | ||| | || Sbjct 6012 TACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTTCT 5953 Query 111213 CTTC--ATTGACATACTT-TGGAAGGGCGATTGATGCCAAATTGCAAACAGC--CGTCTC 111267 | || ||| | | | |||||| ||| |||||||| || ||| | | ||| Sbjct 5952 CATCTGATTCAACGAATGCTGGAAGACAGATATTAGCCAAATTACAGACACCAACTTCTT 5893 Query 111268 ATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAA 111327 | | | | ||| || | || || ||||||||||| |||||| || || | Sbjct 5892 TTGGTGAG--GAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCGAG 5835 Query 111328 ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 111387 ||||||||| |||||||| |||| || ||||| ||||||| |||| | || || || || Sbjct 5834 ATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGT 5775 Query 111388 CTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG 111446 || || || | | | ||| | ||||| | | | | || | ||| | | Sbjct 5774 TTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG-ACAGTTCTTCTAC 5716 Query 111447 CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG 111506 | || || ||| || || || ||||| | ||| ||||| ||||| | |||| Sbjct 5715 CACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGG 5656 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCT 111566 | || || || || | || |||| | || |||| ||||| ||| || || |||| Sbjct 5655 AAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCT 5596 Query 111567 TCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGT 111626 |||||||||| || |||||||| || | || || | ||| | | | |||||| | Sbjct 5595 TCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCT 5536 Query 111627 CACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGAT 111686 ||| ||||| | || | || | ||| || | |||||| || ||||| || || | || Sbjct 5535 TACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTCCAAAT 5476 Query 111687 AGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGG 111740 |||| || || | || ||||| ||| |||||| ||||| | || || Sbjct 5475 AGACGGCAATGGCACC---AGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGTAC 5419 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 111800 ||| || || |||| ||| ||||| ||||||| || |||||| || || ||| Sbjct 5418 TGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAATGT 5359 Query 111801 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 111860 || | | || | | | |||||| ||||| || ||||| || || || || | Sbjct 5358 ATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGAAA 5299 Query 111861 TTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGA 111920 || || |||| | | | ||| | |||||||| | ||| ||||| || || |||| | Sbjct 5298 TTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGCAA 5239 Query 111921 TAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTG 111980 | ||| || |||||||| ||||| || ||||| |||||||| | |||||||| | Sbjct 5238 CCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAAG 5179 Query 111981 CGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGA 112025 | || |||| || || ||||| || ||| | || ||||| Sbjct 5178 CATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACT-CAAGA 5135 >seq173 Length=13397 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 ||| || ||| ||| ||||||||||| | | | ||||| || || ||||| ||||| Sbjct 11182 GGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACC 11123 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 |||||| | ||| | |||||||||||| | || | ||| || || ||||||||||| | Sbjct 11122 TGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAGCA-AACGATCCGGAGAAGAACA 11064 Query 122777 TACCCTC 122783 |||||| Sbjct 11063 CACCCTC 11057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030594778400