Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq115 295 8e-75
seq173 82.4 1e-10
>seq115
Length=359903
Score = 295 bits (326), Expect = 8e-75
Identities = 1120/1725 (65%), Gaps = 52/1725 (3%)
Strand=Plus/Minus
Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390
||||||| || | || || |||| || || | |||||||| || ||||| || |
Sbjct 6837 TGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGAC 6778
Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCA--T 110448
| | |||||| | || | ||||| |||| | ||| ||| ||||| || || |
Sbjct 6777 CCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAAT 6718
Query 110449 GAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAA-GCGCCCCCGTTGTGCCGCCATATC 110505
||| | ||||| ||| ||| ||| ||| | || || | || | || ||||||||
Sbjct 6717 GAATA--TTCATGGACTGTGA--TTGACAGATGTATGCACCTCTGTCG-GCAGCCATATC 6663
Query 110506 AATGACATCCTTCATCTTA-ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTG 110564
||||||| ||| | | | || |||||||| || ||||| | ||||||| | ||||
Sbjct 6662 AATGACAGATTTC-TGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTCTCTG 6604
Query 110565 GGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCT 110624
| | || || | |||||||| ||||| |||| | || | |||||||| | |
Sbjct 6603 GCACATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGCAT 6544
Query 110625 TGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACT 110684
| ||||| ||| || | ||| ||| || | | | || ||||| ||||
Sbjct 6543 TACTCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAACT 6484
Query 110685 CACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTAT 110744
|||| || | |||||| | |||||||| | |||| |||| || || ||||| || |
Sbjct 6483 CACCGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTTGT 6424
Query 110745 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 110804
||||| || || | || || || |||||||||||||||| || | || | |
Sbjct 6423 AACCCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAATTCCTCA 6364
Query 110805 GACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTC 110862
|| |||| || | |||| | |||||||||| | || | ||||||||
Sbjct 6363 ATCCTTTCTTGGCGACTTGAGCCTTTAAGTCATCCCAGTCCCAAA-GATCGGTTGGTTTC 6305
Query 110863 ACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTC 110922
|||| |||| ||| | ||||| | |||| || || || || || || | |||
Sbjct 6304 TTATTCC-ACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCGTATGTTGA 6246
Query 110923 ATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGT 110982
||||| ||||| | |||| | || ||| | |||| | || || || | ||
Sbjct 6245 ATAGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATAAAGT 6186
Query 110983 TTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA---TCAAATGCGTAG-CG-- 111036
|||||||| || ||||| || ||||| || | || || | |||| ||
Sbjct 6185 CTCAAAGATCTGAATATTCAATTCACGAGCTTC---TGGACTCTCGAACG-GTAGACGAA 6130
Query 111037 GCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCAT 111096
||| || || || || || |||||||| | ||| | | |||||||||| | || |||
Sbjct 6129 GCATGAAGAAAGTA--TCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTCAT 6072
Query 111097 ATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGAT 111155
||| || || || || ||| ||| ||||| | || ||||| || |||| ||| | |
Sbjct 6071 ATTCGAATTACGGGCC-TCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAAGT 6013
Query 111156 TTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA--AGTGCGAGT-CT 111212
| ||||||| ||| ||||||| ||| | ||| ||| | | || | ||| | ||
Sbjct 6012 TACGAGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTTCT 5953
Query 111213 CTTC--ATTGACATACTT-TGGAAGGGCGATTGATGCCAAATTGCAAACAGC--CGTCTC 111267
| || ||| | | | |||||| ||| |||||||| || ||| | | |||
Sbjct 5952 CATCTGATTCAACGAATGCTGGAAGACAGATATTAGCCAAATTACAGACACCAACTTCTT 5893
Query 111268 ATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAA 111327
| | | | ||| || | || || ||||||||||| |||||| || || |
Sbjct 5892 TTGGTGAG--GAGTATTCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCGAG 5835
Query 111328 ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 111387
||||||||| |||||||| |||| || ||||| ||||||| |||| | || || || ||
Sbjct 5834 ATTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGT 5775
Query 111388 CTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG 111446
|| || || | | | ||| | ||||| | | | | || | ||| | |
Sbjct 5774 TTCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG-ACAGTTCTTCTAC 5716
Query 111447 CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG 111506
| || || ||| || || || ||||| | ||| ||||| ||||| | ||||
Sbjct 5715 CACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGG 5656
Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCT 111566
| || || || || | || |||| | || |||| ||||| ||| || || ||||
Sbjct 5655 AAAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCT 5596
Query 111567 TCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGT 111626
|||||||||| || |||||||| || | || || | ||| | | | |||||| |
Sbjct 5595 TCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCT 5536
Query 111627 CACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGAT 111686
||| ||||| | || | || | ||| || | |||||| || ||||| || || | ||
Sbjct 5535 TACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTCCAAAT 5476
Query 111687 AGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGG 111740
|||| || || | || ||||| ||| |||||| ||||| | || ||
Sbjct 5475 AGACGGCAATGGCACC---AGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGTAC 5419
Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 111800
||| || || |||| ||| ||||| ||||||| || |||||| || || |||
Sbjct 5418 TGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAATGT 5359
Query 111801 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 111860
|| | | || | | | |||||| ||||| || ||||| || || || || |
Sbjct 5358 ATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGAAA 5299
Query 111861 TTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGA 111920
|| || |||| | | | ||| | |||||||| | ||| ||||| || || |||| |
Sbjct 5298 TTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGCAA 5239
Query 111921 TAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTG 111980
| ||| || |||||||| ||||| || ||||| |||||||| | |||||||| |
Sbjct 5238 CCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAAG 5179
Query 111981 CGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGA 112025
| || |||| || || ||||| || ||| | || |||||
Sbjct 5178 CATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACT-CAAGA 5135
>seq173
Length=13397
Score = 82.4 bits (90), Expect = 1e-10
Identities = 96/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
||| || ||| ||| ||||||||||| | | | ||||| || || ||||| |||||
Sbjct 11182 GGCGAAGTCCGTGTGTAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACC 11123
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776
|||||| | ||| | |||||||||||| | || | ||| || || ||||||||||| |
Sbjct 11122 TGGCATCAAACCTCTCTTCTTCAACCAGAAGATCGAAGCA-AACGATCCGGAGAAGAACA 11064
Query 122777 TACCCTC 122783
||||||
Sbjct 11063 CACCCTC 11057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628030594778400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |