Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq115 217 2e-51 seq173 107 2e-18 >seq115 Length=359903 Score = 217 bits (240), Expect = 2e-51 Identities = 1104/1726 (64%), Gaps = 54/1726 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||| | || |||| || || | ||||||||| || ||||| || | Sbjct 6837 TGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGAC 6778 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCA--T 117922 ||| |||||| |||| | ||||| || | |||||| | ||||| || || | Sbjct 6777 CCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAAT 6718 Query 117923 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 117982 ||| | ||||| || |||||| |||| | || | || || ||||||||||| Sbjct 6717 GAATA--TTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCATATCAAT 6660 Query 117983 CACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTT-AATATCATCTGGGA 118041 ||| ||| ||| ||||| || || | || | ||||| ||| || ||||| | Sbjct 6659 GACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTC-TCTGGCA 6601 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTG 118101 || | || ||||| || ||| |||| | || | |||||||| | || Sbjct 6600 CATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGCATTAC 6541 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161 ||||| ||| || | ||| |||| || | || ||| |||| ||||||| Sbjct 6540 TCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAACTCAC 6481 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || | | ||| ||||||| |||| ||| ||||||| || || || |||| || Sbjct 6480 CGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTTGTAAC 6421 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTACGGAGA 118280 ||| || || | ||| || || || ||||| ||||||| | | || | || | | Sbjct 6420 CCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAA-TTCCTCAAT 6362 Query 118281 CCCTT-TTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCT-TTGTCTCCC 118338 || || || | | | | |||| | | |||||||| | || | ||| | | Sbjct 6361 CCTTTCTTGGCGACTT-GAGCCTTTAAGTCATCCCAGTCCCAAA-GATCGGTTGGTTTCT 6304 Query 118339 CCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 118398 | |||||||||| | || |||||||||| || ||||||||||| || |||| || Sbjct 6303 TATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCGTATGTTGAAT 6244 Query 118399 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 | | || || | | || | || | | || | || || || || | || | Sbjct 6243 AGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATAAAGTCT 6184 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA--AACGCGAGTCG--GCAC 118514 |||| || || ||||| | | || || ||| || |||| || || ||| Sbjct 6183 CAAAGATCTGAATATTCAATTCACGAGCTTCT--GGACTCTCGAACGGTAGACGAAGCAT 6126 Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 || || || || || |||||||||| ||||| |||| || | || ||||||||| Sbjct 6125 GAAGAAAGTA--TCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTCATATTC 6068 Query 118575 GACTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 118633 || || || || ||| | | ||||| | ||||| || ||||| || || | || Sbjct 6067 GAATTACGGGCC-TCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAAGTTACG 6009 Query 118634 GGTGACAACCTTTGTGATTTCATGAAGCTTTTC---GT--AATCAAAAC---TGCGAGTC 118685 || |||||||| ||||||| ||| | || || || || ||| || | | || Sbjct 6008 AGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTTCTCATC 5949 Query 118686 TC-TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAG--AGGTCTCA 118742 | |||| || || || ||||| ||| |||| |||||| ||| | ||| Sbjct 5948 TGATTCAACGA-ATGCT--GGAAGACAGATATTAGCCAAATTACAGACACCAACTTCTTT 5892 Query 118743 TCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAG 118802 | | | ||| | || | || || ||| ||||| || |||||| || || | Sbjct 5891 TGGTGAGGAGTAT--TCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCGAGA 5834 Query 118803 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTC 118862 ||||||||||| |||| ||||||| ||||| ||||| | |||| |||| || || || Sbjct 5833 TTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGTT 5774 Query 118863 TCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGC 118921 || ||||||| || | ||| | ||| | | | | || | ||||| | | Sbjct 5773 TCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG-ACAGTTCTTCTACC 5715 Query 118922 TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGA 118981 || || || | || || || ||||| | ||| ||||| ||||| | | || || Sbjct 5714 ACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGGA 5655 Query 118982 GAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 119041 || || || || | | || |||| | || |||| ||||| || || || ||||| Sbjct 5654 AAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCTT 5595 Query 119042 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 119101 |||||| || || || ||||| || || | ||| | ||| || | | ||||| | Sbjct 5594 CATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTT 5535 Query 119102 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || || || | || | || | || || | |||||| || ||||| ||||||| || Sbjct 5534 ACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATA 5475 Query 119162 CACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGC 119215 || || || | || | |||| |||| | || | ||||| || ||||| Sbjct 5474 GACGGCAATGGCACC---AGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGTACT 5418 Query 119216 GTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TA 119273 ||| || ||||||| ||| ||||||||||||| || ||||| || || || || Sbjct 5417 GTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAATGTA 5358 Query 119274 CGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 119333 ||| | | | || | | | ||||| |||||||| ||||| || || || || Sbjct 5357 TGAGCC--AGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGAA 5300 Query 119334 ATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 119393 ||| ||||||| | | | | | ||||||| || ||||| |||||| | || | || Sbjct 5299 ATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGCA 5240 Query 119394 ATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTC 119453 | | ||| || ||||| ||||| || || ||||| || ||||| | ||||||| Sbjct 5239 ACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAA 5180 Query 119454 GCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGA 119499 || || |||| || || ||||| || ||| | || ||||| Sbjct 5179 GCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACT-CAAGA 5135 >seq173 Length=13397 Score = 107 bits (118), Expect = 2e-18 Identities = 280/414 (68%), Gaps = 20/414 (5%) Strand=Plus/Minus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 |||| ||||||||||||||| ||||| || |||| || |||||||| ||||||||| Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401 Query 129797 GGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGA-CGATC---CGA 129852 || ||||| | ||| | | || ||| ||| | ||| | | ||| || Sbjct 11400 GGATTCTTGGCGTTGTAGAC--CTT---CTCACATCCGAGAGAGACCAGCAATCTGTCGG 11346 Query 129853 GAC-GTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTACATGGG 129910 || | | |||| ||| ||| ||||| | ||| |||||||||| | | | ||| || Sbjct 11345 CACAGAAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACA-GGT 11287 Query 129911 AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG-CGTGA-- 129967 | ||||| ||| | |||||| || || || || ||| || ||| | ||| Sbjct 11286 AATGCGTCTCTCCAGAAACTCTTCTCGATATCGACGGCCTCCGTCATGATTCTCTTGATG 11227 Query 129968 ATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCTG 130026 ||||||| | | ||| || || |||| | ||| || ||| || ||| Sbjct 11226 ATGGTCT---TACTAGGAGGAT-GCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGT 11171 Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||| || | | |||| || || |||||||| ||||||||||| | ||| Sbjct 11170 GTGTAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACC 11111 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 | ||||||||||||||| |||| | ||| || || |||||||| | ||||| Sbjct 11110 TCTCTTCTTCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTC 11057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433816251240