Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq115 217 2e-51
seq173 107 2e-18
>seq115
Length=359903
Score = 217 bits (240), Expect = 2e-51
Identities = 1104/1726 (64%), Gaps = 54/1726 (3%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||| |||| | || |||| || || | ||||||||| || ||||| || |
Sbjct 6837 TGAACTGGATGGCACGTGCGGCAGCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGAC 6778
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCA--T 117922
||| |||||| |||| | ||||| || | |||||| | ||||| || || |
Sbjct 6777 CCTTCTTCCATCCATAGAAGTGCATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAAT 6718
Query 117923 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 117982
||| | ||||| || |||||| |||| | || | || || |||||||||||
Sbjct 6717 GAATA--TTCATGGACTGTGATTGACAGATGTATGCACCTCTGTCGGCAGCCATATCAAT 6660
Query 117983 CACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTT-AATATCATCTGGGA 118041
||| ||| ||| ||||| || || | || | ||||| ||| || ||||| |
Sbjct 6659 GACAGATTTCTGTGAGATCTCCCAAACGGTACGATACAATTTCTTGAATTTC-TCTGGCA 6601
Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTG 118101
|| | || ||||| || ||| |||| | || | |||||||| | ||
Sbjct 6600 CATTTGGTAAGTTCTGGATAGAACCATTATCCTTAATGATAAAGTCCTTCATTGCATTAC 6541
Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161
||||| ||| || | ||| |||| || | || ||| |||| |||||||
Sbjct 6540 TCCAGATACCCATATCGATGAAGTCCTTCAACATATAAGGATTAACAATCTGGAACTCAC 6481
Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221
| || | | ||| ||||||| |||| ||| ||||||| || || || |||| ||
Sbjct 6480 CGGCCAAAACTCTTCTTTGATAGATGTTGGATGTGAATGGCTCGAAACATTCGTTGTAAC 6421
Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTACGGAGA 118280
||| || || | ||| || || || ||||| ||||||| | | || | || | |
Sbjct 6420 CCATAATCTGAGATGTAGATGCAGTTGGCATTGGTGCCAATAACAACGAA-TTCCTCAAT 6362
Query 118281 CCCTT-TTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCT-TTGTCTCCC 118338
|| || || | | | | |||| | | |||||||| | || | ||| | |
Sbjct 6361 CCTTTCTTGGCGACTT-GAGCCTTTAAGTCATCCCAGTCCCAAA-GATCGGTTGGTTTCT 6304
Query 118339 CCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 118398
| |||||||||| | || |||||||||| || ||||||||||| || |||| ||
Sbjct 6303 TATTCCACATATCATATTGAAGGATACCTTTAGATGCTGGCGATCCTTCGTATGTTGAAT 6244
Query 118399 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458
| | || || | | || | || | | || | || || || || | || |
Sbjct 6243 AGGTACCTTCCTCGGCAGCTAGTTGACAAGATTCTTCCAATGCAGCATGGTATAAAGTCT 6184
Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA--AACGCGAGTCG--GCAC 118514
|||| || || ||||| | | || || ||| || |||| || || |||
Sbjct 6183 CAAAGATCTGAATATTCAATTCACGAGCTTCT--GGACTCTCGAACGGTAGACGAAGCAT 6126
Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574
|| || || || || |||||||||| ||||| |||| || | || |||||||||
Sbjct 6125 GAAGAAAGTA--TCTGCAAGACCTTGGATACCGATAGCAATAGGTCTATTTCTCATATTC 6068
Query 118575 GACTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 118633
|| || || || ||| | | ||||| | ||||| || ||||| || || | ||
Sbjct 6067 GAATTACGGGCC-TCTGGAACTGGATAGTAGTTCCTGTCTATAACTCTGTTCAAGTTACG 6009
Query 118634 GGTGACAACCTTTGTGATTTCATGAAGCTTTTC---GT--AATCAAAAC---TGCGAGTC 118685
|| |||||||| ||||||| ||| | || || || || ||| || | | ||
Sbjct 6008 AGTAACAACCTTAGTGATTTGATGTAATTTCTCAAAGTTGAACCAAGACGATTTCTCATC 5949
Query 118686 TC-TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAG--AGGTCTCA 118742
| |||| || || || ||||| ||| |||| |||||| ||| | |||
Sbjct 5948 TGATTCAACGA-ATGCT--GGAAGACAGATATTAGCCAAATTACAGACACCAACTTCTTT 5892
Query 118743 TCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAG 118802
| | | ||| | || | || || ||| ||||| || |||||| || || |
Sbjct 5891 TGGTGAGGAGTAT--TCAACAACCTCACAGCATAAGTTGGATGACTTAATAGTACCGAGA 5834
Query 118803 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTC 118862
||||||||||| |||| ||||||| ||||| ||||| | |||| |||| || || ||
Sbjct 5833 TTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGTT 5774
Query 118863 TCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGC 118921
|| ||||||| || | ||| | ||| | | | | || | ||||| | |
Sbjct 5773 TCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTG-ACAGTTCTTCTACC 5715
Query 118922 TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGA 118981
|| || || | || || || ||||| | ||| ||||| ||||| | | || ||
Sbjct 5714 ACGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGGA 5655
Query 118982 GAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 119041
|| || || || | | || |||| | || |||| ||||| || || || |||||
Sbjct 5654 AAGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCTT 5595
Query 119042 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 119101
|||||| || || || ||||| || || | ||| | ||| || | | ||||| |
Sbjct 5594 CATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATCTCTTCCTT 5535
Query 119102 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161
|| || || | || | || | || || | |||||| || ||||| ||||||| ||
Sbjct 5534 ACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAAGGTTCCAAATA 5475
Query 119162 CACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGC 119215
|| || || | || | |||| |||| | || | ||||| || |||||
Sbjct 5474 GACGGCAATGGCACC---AGGACGCTTGTTACCACCTTGATCGACATATCTGGCAGTACT 5418
Query 119216 GTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TA 119273
||| || ||||||| ||| ||||||||||||| || ||||| || || || ||
Sbjct 5417 GTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTACCTGCAATGTA 5358
Query 119274 CGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 119333
||| | | | || | | | ||||| |||||||| ||||| || || || ||
Sbjct 5357 TGAGCC--AGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCGGTTTTAGAA 5300
Query 119334 ATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 119393
||| ||||||| | | | | | ||||||| || ||||| |||||| | || | ||
Sbjct 5299 ATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCTTTCATGGCA 5240
Query 119394 ATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTC 119453
| | ||| || ||||| ||||| || || ||||| || ||||| | |||||||
Sbjct 5239 ACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAGGTTGGTGAA 5180
Query 119454 GCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGA 119499
|| || |||| || || ||||| || ||| | || |||||
Sbjct 5179 GCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACT-CAAGA 5135
>seq173
Length=13397
Score = 107 bits (118), Expect = 2e-18
Identities = 280/414 (68%), Gaps = 20/414 (5%)
Strand=Plus/Minus
Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796
|||| ||||||||||||||| ||||| || |||| || |||||||| |||||||||
Sbjct 11460 ACCCTCTTCTCGAAGAAGTTCGTCTTTCCTGCCAACGAAATGTTCTCCATGAAATCAAAT 11401
Query 129797 GGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGA-CGATC---CGA 129852
|| ||||| | ||| | | || ||| ||| | ||| | | ||| ||
Sbjct 11400 GGATTCTTGGCGTTGTAGAC--CTT---CTCACATCCGAGAGAGACCAGCAATCTGTCGG 11346
Query 129853 GAC-GTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTACATGGG 129910
|| | | |||| ||| ||| ||||| | ||| |||||||||| | | | ||| ||
Sbjct 11345 CACAGAAGTCAACGTATTCACACATCATATCGCAGTTCATACCCAACAACGAAACA-GGT 11287
Query 129911 AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG-CGTGA-- 129967
| ||||| ||| | |||||| || || || || ||| || ||| | |||
Sbjct 11286 AATGCGTCTCTCCAGAAACTCTTCTCGATATCGACGGCCTCCGTCATGATTCTCTTGATG 11227
Query 129968 ATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCTG 130026
||||||| | | ||| || || |||| | ||| || ||| || |||
Sbjct 11226 ATGGTCT---TACTAGGAGGAT-GCTTCAAGTGTGAGAATAGGAGGCAGGCGAAGTCCGT 11171
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| |||||||| || | | |||| || || |||||||| ||||||||||| | |||
Sbjct 11170 GTGTAGACCCTCATCCCTGCAGATAAGCTCGTTCGAGAATGTAAGACCTGGCATCAAACC 11111
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140
| ||||||||||||||| |||| | ||| || || |||||||| | |||||
Sbjct 11110 TCTCTTCTTCAACCAGAAGATCGAAGCAAACGATCCGGAGAAGAACACACCCTC 11057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618433816251240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |