Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq115 255 7e-63 seq116 87.8 2e-12 >seq115 Length=359903 Score = 255 bits (282), Expect = 7e-63 Identities = 1107/1727 (64%), Gaps = 43/1727 (2%) Strand=Plus/Plus Query 104237 ATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGAC 104296 ||||| || ||| | ||||| ||||| || ||| | || | ||| | ||| || Sbjct 5091 ATGCGTGTTGCCGTTGGTATCCATGGTAGTGATATTCCTAAAGTTCTTGAGTCTTACAAC 5150 Query 104297 AAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCA 104356 ||||| || || |||| || || |||||||| | |||||||| ||||| || Sbjct 5151 CTCATGTCTAAACGTTACTTCACGCATGCTTCACCAACCTTGTTCAATGCAGGTACTCCT 5210 Query 104357 AGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATC 104416 ||||| || ||||| || ||| | | |||| || || ||||| ||| | |||||| Sbjct 5211 AGACCTCAGATGTCTTCATGTTTCTTGGTTGCCATGAAAGATGACTCCATCGAAGGTATC 5270 Query 104417 TATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCAC 104476 || | ||| | | | |||| || ||| || || || || ||||| || ||||| Sbjct 5271 TACGATACTTTGAAGCAGTGCGCTTTAATTTCTAAAACCGCCGGTGGTATCGGTATGCAT 5330 Query 104477 ATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGT 104536 |||||| | | | || | | || ||| || || |||||| || ||||| Sbjct 5331 ATCCATAACATTCGTGCTACTGGCTCATACATTGCAGGTACCAATGGTACTTCTAATGGT 5390 Query 104537 ATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG---- 104592 || ||||| ||| |||| || || ||| || || | ||||| |||||| ||| Sbjct 5391 ATCATTCCTATGATTCGTGTCTTCAACAGTACTGCCAGATATGTCGATCAAGGTGGTAAC 5450 Query 104593 --GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAG 104650 ||||| || | || || |||||| | || || ||||| || |||||| | || Sbjct 5451 AAGCGTCCT---GGTGCCATTGCCGTCTATTTGGAACCTTGGCATGCAGATATCTTCGAT 5507 Query 104651 TTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCC 104710 ||| | || | || | ||||| ||| | || ||| | ||| ||| | ||| | Sbjct 5508 TTCATCGATATCCGGATGAACCATGGTAAGGAAGAGATTAGAGCCCGTGATTTGTTCCCA 5567 Query 104711 GCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTC 104770 ||||| |||||||| ||||| ||||||||| | || || || | ||| ||| || | Sbjct 5568 GCTCTTTGGATTCCTGATCTTTTCATGAAGCGTGTGGAAGAAAATGGTCCATGGACTTTG 5627 Query 104771 TTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTT 104830 || | || | || ||||| || ||||||| | ||||| ||||| ||| | Sbjct 5628 TTCTCACCTTCTGAAGCTCCTGGCCTTTCCGATGTCTACGGTGATGAGTTCGAAAAATTG 5687 Query 104831 TACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTG 104889 ||||| || || || | |||||||| | | || || | || | | | | || Sbjct 5688 TACACCAAATATGAAAAGGAAGGTCGTGGTAGAAGAACTGT-CAAGGCACAAAAGCTTTG 5746 Query 104890 GAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGC 104949 | | ||| | || | ||||| || |||||||| |||| |||| | |||||||| || Sbjct 5747 GTATCAGATTTTGGAGGCCCAAACTGAAACTGGTACTCCATTCATGATCTACAAAGATGC 5806 Query 104950 CTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTAC 105009 |||||| ||||||||||||||||||| | ||| || ||| ||||| | || Sbjct 5807 TTGTAACAGAAAGAGTAATCAAAAGAATCTCGGTACTATTAAGTCATCCAACTTATGCTG 5866 Query 105010 AGAAATCTTGGAATT-TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 105068 || | | |||| | | || || | || || ||| ||||| | || ||| Sbjct 5867 TGAGGTTGTTGAATACTCCTCACCAAAAGAAGTTGG-TGTCTGTAATTTGGCTAATATCT 5925 Query 105069 CTCTCCCCAAGTAT--GTGGATCCAGA-GACAAAGACATTTGATTA-----TGAAAAACT 105120 ||| || || || || || |||| || ||| ||| || ||| ||| | Sbjct 5926 GTCTTCC--AGCATTCGTTGAATCAGATGAGAAATCGTCTTGGTTCAACTTTGAGAAATT 5983 Query 105121 CCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTA 105180 || || | || || ||| || ||| | ||||||||||| || || || | || Sbjct 5984 ACATCAAATCACTAAGGTTGTTACTCGTAACTTGAACAGAGTTATAGACAGGAACTACTA 6043 Query 105181 CCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTC 105239 || ||| ||| || ||||| || ||||||||| | | || |||| | ||||| | | Sbjct 6044 TCCAGTTCCAGAG-GCCCGTAATTCGAATATGAGAAATAGACCTATTGCTATCGGTATCC 6102 Query 105240 AGGGTCTCGCGGATG---TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGA 105296 | ||||| || ||| | ||||| ||| ||| | || || ||| ||||| Sbjct 6103 AAGGTCTTGCAGATACTTTCTTCATGCTTCGTCTAC-CGTTCGAGAGTCCA--GAAGCTC 6159 Query 105297 AGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAG 105356 ||| | ||| | || |||||||| | || || || || | || | || Sbjct 6160 GTGAATTGAATATTCAGATCTTTGAGACTTTATACCATGCTGCATTGGAAGAATCTTGTC 6219 Query 105357 AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGG 105416 | | || | | || ||| | ||| ||| | || || || ||||| || |||| Sbjct 6220 AACTAGCTGCCGAGGAAGGTACCTATTCAACATACGAAGGATCGCCAGCATCTAAAGGTA 6279 Query 105417 TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCACTACGACTGGGAAGCTCTC 105475 | ||||||| |||||||||| || || ||||| | || | |||||||| | | Sbjct 6280 TCCTTCAATATGATATGTGG-AATAAGAAACCAACCGATCTTTGGGACTGGGATGACTTA 6338 Query 105476 AAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACA 105535 |||| | || |||| || | | || | | |||| ||||||||||| Sbjct 6339 AAGGCTCAAGTCGCCAAGAAAGGATTGAGGAATTCGTTGTTATTGGCACCAATGCCAACT 6398 Query 105536 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 105595 || || || | || || ||||| | || ||||| || || || | ||| | |||||| Sbjct 6399 GCATCTACATCTCAGATTATGGGTTACAACGAATGTTTCGAGCCATTCACATCCAACATC 6458 Query 105596 TATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGAC 105655 |||| |||||| | || || ||||| |||||| || || | || | ||| Sbjct 6459 TATCAAAGAAGAGTTTTGGCCGGTGAGTTCCAGATTGTTAATCCTTATATGTTGAAGGAC 6518 Query 105656 CTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGT 105715 ||| || || ||| ||||| || | |||||||| | || | || | |||| Sbjct 6519 TTCATCGATATGGGTATCTGGAGTAATGCAATGAAGGACTTTATCATTAAGGATAATGGT 6578 Query 105716 TCCATTCAAAATATTGTGGATATTCCAAATGAAATT-AAGAAGTTGTACCGCACAGTTTG 105774 || || || || | || | ||| | |||||| ||||| ||||| || || ||||| Sbjct 6579 TCTATCCAGAACTTACCAAATGTGCCAGA-GAAATTCAAGAAATTGTATCGTACCGTTTG 6637 Query 105775 GGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCA 105834 ||| ||| ||| ||||||||| ||||| || || | ||| | ||| ||| Sbjct 6638 GGAGATCTCACAGAAATCTGTCATTGATATGGCTGCCGACAGAGGTGCATACATCTGTCA 6697 Query 105835 AAGTCAAAGT--ATGAATCTCTTCA--TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTA 105890 | ||| ||| ||||| | |||| || || ||||| ||| ||| | |||| | Sbjct 6698 A--TCACAGTCCATGAA--TATTCATTTGCAATCCCCAACTATGGGTAAGTTGACTTCCA 6753 Query 105891 TGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 ||||| | || | |||||||||||||| || || || ||||| ||| Sbjct 6754 TGCACTTCTATGGATGGAAGAAGGGTCTTAAGACTGGTATGTACTAC 6800 >seq116 Length=77448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAG 9762 |||||||| |||||||| || ||||| ||||| |||||| || || | ||| ||| | Sbjct 73820 GCATCAATTTCATCAATAAACACGATCGATGGTGCATTTTCACGGGCAGTCTT-AAATAA 73762 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 || || ||||| || || ||||| |||||||| || || || | | ||||| | Sbjct 73761 TTCACGAACACGGGATGCACCGACACCGACAAACATTTCAACGAATTCGGAACCGGAA-A 73703 Query 9823 TTGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | || ||| || ||| | | ||| ||| | ||| ||| || | ||||||||| | Sbjct 73702 CAGAATAGAATGGAACACCGGCCTGACCGGCAGTAGCTTTGGCAAGCAAAGTCTTACCGG 73643 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||| || ||| | | || ||||| || ||||||||||| || Sbjct 73642 TACCAGGTGGACCAGACAAGATAGCACCACGAGGAATCTTGGCACC 73597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259494953960