Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq115 255 7e-63
seq116 87.8 2e-12
>seq115
Length=359903
Score = 255 bits (282), Expect = 7e-63
Identities = 1107/1727 (64%), Gaps = 43/1727 (2%)
Strand=Plus/Plus
Query 104237 ATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGAC 104296
||||| || ||| | ||||| ||||| || ||| | || | ||| | ||| ||
Sbjct 5091 ATGCGTGTTGCCGTTGGTATCCATGGTAGTGATATTCCTAAAGTTCTTGAGTCTTACAAC 5150
Query 104297 AAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCA 104356
||||| || || |||| || || |||||||| | |||||||| ||||| ||
Sbjct 5151 CTCATGTCTAAACGTTACTTCACGCATGCTTCACCAACCTTGTTCAATGCAGGTACTCCT 5210
Query 104357 AGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATC 104416
||||| || ||||| || ||| | | |||| || || ||||| ||| | ||||||
Sbjct 5211 AGACCTCAGATGTCTTCATGTTTCTTGGTTGCCATGAAAGATGACTCCATCGAAGGTATC 5270
Query 104417 TATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCAC 104476
|| | ||| | | | |||| || ||| || || || || ||||| || |||||
Sbjct 5271 TACGATACTTTGAAGCAGTGCGCTTTAATTTCTAAAACCGCCGGTGGTATCGGTATGCAT 5330
Query 104477 ATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGT 104536
|||||| | | | || | | || ||| || || |||||| || |||||
Sbjct 5331 ATCCATAACATTCGTGCTACTGGCTCATACATTGCAGGTACCAATGGTACTTCTAATGGT 5390
Query 104537 ATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG---- 104592
|| ||||| ||| |||| || || ||| || || | ||||| |||||| |||
Sbjct 5391 ATCATTCCTATGATTCGTGTCTTCAACAGTACTGCCAGATATGTCGATCAAGGTGGTAAC 5450
Query 104593 --GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAG 104650
||||| || | || || |||||| | || || ||||| || |||||| | ||
Sbjct 5451 AAGCGTCCT---GGTGCCATTGCCGTCTATTTGGAACCTTGGCATGCAGATATCTTCGAT 5507
Query 104651 TTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCC 104710
||| | || | || | ||||| ||| | || ||| | ||| ||| | ||| |
Sbjct 5508 TTCATCGATATCCGGATGAACCATGGTAAGGAAGAGATTAGAGCCCGTGATTTGTTCCCA 5567
Query 104711 GCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTC 104770
||||| |||||||| ||||| ||||||||| | || || || | ||| ||| || |
Sbjct 5568 GCTCTTTGGATTCCTGATCTTTTCATGAAGCGTGTGGAAGAAAATGGTCCATGGACTTTG 5627
Query 104771 TTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTT 104830
|| | || | || ||||| || ||||||| | ||||| ||||| ||| |
Sbjct 5628 TTCTCACCTTCTGAAGCTCCTGGCCTTTCCGATGTCTACGGTGATGAGTTCGAAAAATTG 5687
Query 104831 TACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTG 104889
||||| || || || | |||||||| | | || || | || | | | | ||
Sbjct 5688 TACACCAAATATGAAAAGGAAGGTCGTGGTAGAAGAACTGT-CAAGGCACAAAAGCTTTG 5746
Query 104890 GAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGC 104949
| | ||| | || | ||||| || |||||||| |||| |||| | |||||||| ||
Sbjct 5747 GTATCAGATTTTGGAGGCCCAAACTGAAACTGGTACTCCATTCATGATCTACAAAGATGC 5806
Query 104950 CTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTAC 105009
|||||| ||||||||||||||||||| | ||| || ||| ||||| | ||
Sbjct 5807 TTGTAACAGAAAGAGTAATCAAAAGAATCTCGGTACTATTAAGTCATCCAACTTATGCTG 5866
Query 105010 AGAAATCTTGGAATT-TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 105068
|| | | |||| | | || || | || || ||| ||||| | || |||
Sbjct 5867 TGAGGTTGTTGAATACTCCTCACCAAAAGAAGTTGG-TGTCTGTAATTTGGCTAATATCT 5925
Query 105069 CTCTCCCCAAGTAT--GTGGATCCAGA-GACAAAGACATTTGATTA-----TGAAAAACT 105120
||| || || || || || |||| || ||| ||| || ||| ||| |
Sbjct 5926 GTCTTCC--AGCATTCGTTGAATCAGATGAGAAATCGTCTTGGTTCAACTTTGAGAAATT 5983
Query 105121 CCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTA 105180
|| || | || || ||| || ||| | ||||||||||| || || || | ||
Sbjct 5984 ACATCAAATCACTAAGGTTGTTACTCGTAACTTGAACAGAGTTATAGACAGGAACTACTA 6043
Query 105181 CCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTC 105239
|| ||| ||| || ||||| || ||||||||| | | || |||| | ||||| | |
Sbjct 6044 TCCAGTTCCAGAG-GCCCGTAATTCGAATATGAGAAATAGACCTATTGCTATCGGTATCC 6102
Query 105240 AGGGTCTCGCGGATG---TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGA 105296
| ||||| || ||| | ||||| ||| ||| | || || ||| |||||
Sbjct 6103 AAGGTCTTGCAGATACTTTCTTCATGCTTCGTCTAC-CGTTCGAGAGTCCA--GAAGCTC 6159
Query 105297 AGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAG 105356
||| | ||| | || |||||||| | || || || || | || | ||
Sbjct 6160 GTGAATTGAATATTCAGATCTTTGAGACTTTATACCATGCTGCATTGGAAGAATCTTGTC 6219
Query 105357 AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGG 105416
| | || | | || ||| | ||| ||| | || || || ||||| || ||||
Sbjct 6220 AACTAGCTGCCGAGGAAGGTACCTATTCAACATACGAAGGATCGCCAGCATCTAAAGGTA 6279
Query 105417 TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCACTACGACTGGGAAGCTCTC 105475
| ||||||| |||||||||| || || ||||| | || | |||||||| | |
Sbjct 6280 TCCTTCAATATGATATGTGG-AATAAGAAACCAACCGATCTTTGGGACTGGGATGACTTA 6338
Query 105476 AAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACA 105535
|||| | || |||| || | | || | | |||| |||||||||||
Sbjct 6339 AAGGCTCAAGTCGCCAAGAAAGGATTGAGGAATTCGTTGTTATTGGCACCAATGCCAACT 6398
Query 105536 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 105595
|| || || | || || ||||| | || ||||| || || || | ||| | ||||||
Sbjct 6399 GCATCTACATCTCAGATTATGGGTTACAACGAATGTTTCGAGCCATTCACATCCAACATC 6458
Query 105596 TATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGAC 105655
|||| |||||| | || || ||||| |||||| || || | || | |||
Sbjct 6459 TATCAAAGAAGAGTTTTGGCCGGTGAGTTCCAGATTGTTAATCCTTATATGTTGAAGGAC 6518
Query 105656 CTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGT 105715
||| || || ||| ||||| || | |||||||| | || | || | ||||
Sbjct 6519 TTCATCGATATGGGTATCTGGAGTAATGCAATGAAGGACTTTATCATTAAGGATAATGGT 6578
Query 105716 TCCATTCAAAATATTGTGGATATTCCAAATGAAATT-AAGAAGTTGTACCGCACAGTTTG 105774
|| || || || | || | ||| | |||||| ||||| ||||| || || |||||
Sbjct 6579 TCTATCCAGAACTTACCAAATGTGCCAGA-GAAATTCAAGAAATTGTATCGTACCGTTTG 6637
Query 105775 GGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCA 105834
||| ||| ||| ||||||||| ||||| || || | ||| | ||| |||
Sbjct 6638 GGAGATCTCACAGAAATCTGTCATTGATATGGCTGCCGACAGAGGTGCATACATCTGTCA 6697
Query 105835 AAGTCAAAGT--ATGAATCTCTTCA--TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTA 105890
| ||| ||| ||||| | |||| || || ||||| ||| ||| | |||| |
Sbjct 6698 A--TCACAGTCCATGAA--TATTCATTTGCAATCCCCAACTATGGGTAAGTTGACTTCCA 6753
Query 105891 TGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937
||||| | || | |||||||||||||| || || || ||||| |||
Sbjct 6754 TGCACTTCTATGGATGGAAGAAGGGTCTTAAGACTGGTATGTACTAC 6800
>seq116
Length=77448
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/226 (70%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAG 9762
|||||||| |||||||| || ||||| ||||| |||||| || || | ||| ||| |
Sbjct 73820 GCATCAATTTCATCAATAAACACGATCGATGGTGCATTTTCACGGGCAGTCTT-AAATAA 73762
Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822
|| || ||||| || || ||||| |||||||| || || || | | ||||| |
Sbjct 73761 TTCACGAACACGGGATGCACCGACACCGACAAACATTTCAACGAATTCGGAACCGGAA-A 73703
Query 9823 TTGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881
| || ||| || ||| | | ||| ||| | ||| ||| || | ||||||||| |
Sbjct 73702 CAGAATAGAATGGAACACCGGCCTGACCGGCAGTAGCTTTGGCAAGCAAAGTCTTACCGG 73643
Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|||| || ||| | | || ||||| || ||||||||||| ||
Sbjct 73642 TACCAGGTGGACCAGACAAGATAGCACCACGAGGAATCTTGGCACC 73597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583259494953960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |