Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq115 161 1e-34 >seq115 Length=359903 Score = 161 bits (178), Expect = 1e-34 Identities = 355/527 (67%), Gaps = 4/527 (1%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| |||||| || | | ||||| || ||| | |||||||| ||| || | Sbjct 5070 GAGAGACCTCAGCATTTACTGATGCGTGTTGCCGTTGGTATCCATGGTAGTGATATTCCT 5129 Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGT-ACTTTACGCACGCCACGCCAAC 53292 || | |||| | ||| || | ||| | ||| || |||| ||||| || | ||||| Sbjct 5130 AAAGTTCTTGAGTCTTACAACCTCATGT-CTAAACGTTACTTCACGCATGCTTCACCAAC 5188 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 | ||||||| || ||||| | ||||||||||| || ||| |||| || ||||| Sbjct 5189 CTTGTTCAATGCAGGTACTCCTAGACCTCAGATGTCTTCATGTTTCTTGGTTGCCATGAA 5248 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 |||||||| ||||| || |||||||| || | ||| |||| || || || || Sbjct 5249 AGATGACTCCATCGAAGGTATCTACGATACTTTGAAGCAGTGCGCTTTAATTTCTAAAAC 5308 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472 | |||||||||||||| || | ||| | ||||| | ||| || || || Sbjct 5309 CGCCGGTGGTATCGGTATGCATATCCATAACATTCGTGCTACTGGCTCATACATTGCAGG 5368 Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 || || || | |||| ||| | |||||| | || |||||||||| || ||| | Sbjct 5369 TACCAATGGTACTTCTAATGGTATCATTCCTATGATTCGTGTCTTCAACAGTACTGCCAG 5428 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 || ||| | || |||||| ||||| | || | | || ||| |||| | || || | Sbjct 5429 ATATGTCGATCAAGGTGGTAACAAGCGTCCTGGTGCCATT-GCCGTCTATTTGGAACCTT 5487 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 |||| || || || | || || |||| | || |||| || ||| | |||||||| Sbjct 5488 GGCATGCAGATATCTTCGATTTCATCGATATCCGGATGAACCATGGTAAGGAAGAGATTA 5547 Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | |||||| |||| ||||||| |||||||| || || |||||| Sbjct 5548 GAGCCCGTGATTTGTTCCCAGCTCTTTGGATTCCTGATCTTTTCATG 5594 Score = 100 bits (110), Expect = 3e-16 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||| | | || || || || |||||||| ||||||| | | ||||| ||| || Sbjct 6613 TCAAGAAATTGTATCGTACCGTTTGGGAGATCTCACAGAAATCTGTCATTGATATGGCTG 6672 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || | ||||| |||||| || || ||||| |||| || |||| ||||| Sbjct 6673 CCGACAGAGGTGCATACATCTGTCAATCACAGTCCATGAATAT--TCATTTGCAATCCCC 6730 Query 55848 CACT--GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 ||| || ||||||| || |||||||| || || ||||||||||| || ||||| || Sbjct 6731 AACTATGGGTAAGTTGACTTCCATGCACTTCTATGGATGGAAGAAGGGTCTTAAGACTGG 6790 Query 55906 TATGTACTATCTGCGGAC 55923 ||||||||| |||| || Sbjct 6791 TATGTACTACTTGCGTAC 6808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214775604200