Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq115 145 9e-30 seq1 122 1e-22 seq110 107 2e-18 >seq115 Length=359903 Score = 145 bits (160), Expect = 9e-30 Identities = 343/518 (66%), Gaps = 9/518 (2%) Strand=Plus/Minus Query 81223 TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGC 81282 || ||| |||||||||| ||||| ||||| || || | ||||| || ||| | Sbjct 5605 TCCACACGCTTCATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTA 5546 Query 81283 GCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCAT 81342 ||| || | ||| ||||| | || | |||| || || | ||| || |||||||| Sbjct 5545 ATCTCTTCCTTACCATGGTTCATCCGGATATCGATGAAATCGAAGATATCTGCATGCCAA 5486 Query 81343 GGCTCCAGATACACGGCGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAA 81396 || |||| ||| ||||| || | || |||| || |||| || | ||| || Sbjct 5485 GGTTCCAAATAGACGGCAATGGCACCAGGACGCTTGTTAC---CACCTTGATCGACATAT 5429 Query 81397 CGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTA 81456 | |||||| ||| || ||||| | |||||| |||||||||| || ||| || ||| Sbjct 5428 CTGGCAGTACTGTTGAAGACACGAATCATAGGAATGATACCATTAGAAGTACCATTGGTA 5369 Query 81457 CCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGAC 81516 || | || || || | || || | || ||| | |||||| ||||| | Sbjct 5368 CCTGCAATGTATGAGCCAGTAGCACGAATGTTATGGATATGCATACCGATACCACCGGCG 5309 Query 81517 CACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTT 81576 || ||||| ||| ||| | |||| || || || || || |||||| || | | Sbjct 5308 GTTTTAGAAATTAAAGCGCACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCATCT 5249 Query 81577 TTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGT 81636 |||||| ||| ||||||||| ||||||||||| || | || |||||||||| Sbjct 5248 TTCATGGCAACCAAGAAACATGAAGACATCTGAGGTCTAGGAGTACCTGCATTGAACAAG 5189 Query 81637 GTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGT 81696 ||||| | || || |||| ||||| || ||||| |||| || | || || Sbjct 5188 GTTGGTGAAGCATGCGTGAAGTAACGTTTAGACATGAGGTTGTAAGACTCAAGAACTTTA 5129 Query 81697 GGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734 |||||||| ||| || ||||| | || |||||||| Sbjct 5128 GGAATATCACTACCATGGATACCAACGGCAACACGCAT 5091 Score = 104 bits (114), Expect = 3e-17 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || |||| |||||||| || ||||| || ||||||||||| || || | |||| Sbjct 6814 GCCTGTGTACGCAAGTAGTACATACCAGTCTTAAGACCCTTCTTCCATCCATAGAAGTGC 6755 Query 80092 ATAGAACTGAGCTT-CGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACT 80149 || ||| | | ||| | || ||| ||| || |||| || |||| ||||| || | Sbjct 6754 ATGGAAGTCAACTTACCCATAGTTGGGGATTGCAAATGA--ATATTCATGGACTGTGATT 6697 Query 80150 GACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCC 80209 |||||||| | || || | || || ||||| ||||| | || || |||| || |||| Sbjct 6696 GACAGATGTATGCACCTCTGTCGGCAGCCATATCAATGACAGATTTCTGTGAGATCTCCC 6637 Query 80210 ATACTGTACGATACA 80224 | || |||||||||| Sbjct 6636 AAACGGTACGATACA 6622 >seq1 Length=504328 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || ||||||||| || || ||||| | || || ||||| ||||| | || || ||||| Sbjct 435304 TAGAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTC 435245 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 ||| | ||||| ||| | ||| || |||||||| ||||||||||| || || || Sbjct 435244 TTCTGACACCATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAGGGAATCCCACCTGA 435185 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || ||| | | ||||| ||||||||||| | || || | | | || || | || || Sbjct 435184 TCAACAGAGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGATTA 435125 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCA 27608 || |||||||||| ||||||||||| Sbjct 435124 CAACATCCAAAAGGAGTCCACTCTTCA 435098 >seq110 Length=92542 Score = 107 bits (118), Expect = 2e-18 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 27383 AAATGGCCAG--AAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGAC 27440 |||| || || |||| ||| | |||||||| || || ||||| ||||| || ||||| Sbjct 53153 AAATAGCTAGTTAAATCTTATCAAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGAC 53094 Query 27441 TATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGA 27500 ||| || | ||||| ||||| || | || | ||| | ||| || || ||||| Sbjct 53093 TATCACCTTGGAGGTCGAGTCTTCGGACACGATCGACAATGTCAAGCAAAAGATCCAGGA 53034 Query 27501 CAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 ||||| |||||||| || || || ||| | | || ||||||||||| || | || || Sbjct 53033 TAAGGAAGGAATTCCACCTGATCAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGA 52974 Query 27561 TGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || || | || || ||| | || |||||||| || ||||| | |||||| Sbjct 52973 TGGCAGAACTCTTTCTGATTACAATATTCAGAAGGAATCTACCCTTCACTTGGTCTTG 52916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309123930480