Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016-
09-25] 179 sequences; 10,219,415 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1 149 1e-30
seq110 143 6e-29
seq107 86.0 1e-11
seq115 84.2 5e-11
>seq1
Length=504328
Score = 149 bits (164), Expect = 1e-30
Identities = 165/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| || || | ||||||||||||||| ||||||||||| ||||| | ||| || || ||
Sbjct 435085 TCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 435144
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||||||| |||||| || ||||| || | | ||||| ||||| || | ||| |||||
Sbjct 435145 GTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGTGGGATTCCCTCCTT 435204
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
||||| ||||| || || || || || ||||||||||| || || || | || ||
Sbjct 435205 ATCCTGAATCTTCTGCTTGACATTGTCAATGGTGTCAGAAGACTCGACTTCCAAGGTAAT 435264
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118
||||| ||||| | ||||| || || | |||||| ||
Sbjct 435265 GGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTCTA 435304
>seq110
Length=92542
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| | ||| | |||||| || || || || || || || ||||| | ||| || || ||
Sbjct 52913 TCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAGAAAGAGTTCTGCC 52972
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||||||| ||| || || || ||||| | | ||||| ||||| |||| |||||||||
Sbjct 52973 ATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 53032
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|||||||||||||| || || || ||||| ||||| || || ||||| | |||||
Sbjct 53033 ATCCTGGATCTTTTGCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGAT 53092
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || || ||||| || || | ||||| ||
Sbjct 53093 AGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 53131
>seq107
Length=108495
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/179 (72%), Gaps = 6/179 (3%)
Strand=Plus/Minus
Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866
||||| |||||||| || ||||| || || ||||| | ||||||| | | | ||| |
Sbjct 46969 CTTCCGAAGAAGCATGGTAGAGGTGGTCAGTCTGCCGTTCGTTTTGCACGTTTAAGAATG 46910
Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCA-- 139924
|||||||| |||||||| | || ||||| || || ||| | || ||| ||||
Sbjct 46909 GAAAAGAGACACAACTATATTAGGAAAGTCGCCGAAGTTGCAGTGCAAAATTTCATCACC 46850
Query 139925 -AAGACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982
| || || ||| | |||| ||||| | | ||||||||||| || || ||||||||
Sbjct 46849 AATGATAA--AGT-TAATGTTGCTGGTTTGATCTTGGCAGGTTCTGCCGATTTCAAGAC 46794
>seq115
Length=359903
Score = 84.2 bits (92), Expect = 5e-11
Identities = 193/291 (66%), Gaps = 0/291 (0%)
Strand=Plus/Minus
Query 178094 TTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCACC 178153
|||||||| || ||||||||| | ||||||||||| ||||| || | ||
Sbjct 5833 TTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGTT 5774
Query 178154 TCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCT 178213
|||| ||| ||| | | ||| |||| |||||||| || || |||||| || | |
Sbjct 5773 TCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACAGTTCTTCTACCA 5714
Query 178214 TTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCG 178273
||||| || || || || |||| | | ||||| || || ||||||||
Sbjct 5713 CGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGGAA 5654
Query 178274 AGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTC 178333
|| || ||||| ||| || |||| | | |||| |||| | ||| | ||| || |||
Sbjct 5653 AGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCTTC 5594
Query 178334 ATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCATC 178384
||||| || |||| |||| | || ||| | || | |||||| |||
Sbjct 5593 ATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATC 5543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159149341557335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |