Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20custersianus_20[genbank_20GCA_5F001746385.1_202016- 09-25] 179 sequences; 10,219,415 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq110 143 6e-29 seq107 86.0 1e-11 seq115 84.2 5e-11 >seq1 Length=504328 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||||||||||||| ||||||||||| ||||| | ||| || || || Sbjct 435085 TCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 435144 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| |||||| || ||||| || | | ||||| ||||| || | ||| ||||| Sbjct 435145 GTCTTCCAACTGCTTACCAGCGAAAATCAATCTCTGTTGATCAGGTGGGATTCCCTCCTT 435204 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||| ||||| || || || || || ||||||||||| || || || | || || Sbjct 435205 ATCCTGAATCTTCTGCTTGACATTGTCAATGGTGTCAGAAGACTCGACTTCCAAGGTAAT 435264 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||||| ||||| | ||||| || || | |||||| || Sbjct 435265 GGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTCTA 435304 >seq110 Length=92542 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | |||||| || || || || || || || ||||| | ||| || || || Sbjct 52913 TCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAGAAAGAGTTCTGCC 52972 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||| || || || ||||| | | ||||| ||||| |||| ||||||||| Sbjct 52973 ATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 53032 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||||| || || || ||||| ||||| || || ||||| | ||||| Sbjct 53033 ATCCTGGATCTTTTGCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGAT 53092 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || ||||| || || | ||||| || Sbjct 53093 AGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 53131 >seq107 Length=108495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||| |||||||| || ||||| || || ||||| | ||||||| | | | ||| | Sbjct 46969 CTTCCGAAGAAGCATGGTAGAGGTGGTCAGTCTGCCGTTCGTTTTGCACGTTTAAGAATG 46910 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCA-- 139924 |||||||| |||||||| | || ||||| || || ||| | || ||| |||| Sbjct 46909 GAAAAGAGACACAACTATATTAGGAAAGTCGCCGAAGTTGCAGTGCAAAATTTCATCACC 46850 Query 139925 -AAGACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982 | || || ||| | |||| ||||| | | ||||||||||| || || |||||||| Sbjct 46849 AATGATAA--AGT-TAATGTTGCTGGTTTGATCTTGGCAGGTTCTGCCGATTTCAAGAC 46794 >seq115 Length=359903 Score = 84.2 bits (92), Expect = 5e-11 Identities = 193/291 (66%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 178094 TTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCACC 178153 |||||||| || ||||||||| | ||||||||||| ||||| || | || Sbjct 5833 TTCTTTTGATTACTCTTTCTGTTACAAGCATCTTTGTAGATCATGAATGGAGTACCAGTT 5774 Query 178154 TCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCT 178213 |||| ||| ||| | | ||| |||| |||||||| || || |||||| || | | Sbjct 5773 TCAGTTTGGGCCTCCAAAATCTGATACCAAAGCTTTTGTGCCTTGACAGTTCTTCTACCA 5714 Query 178214 TTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCG 178273 ||||| || || || || |||| | | ||||| || || |||||||| Sbjct 5713 CGACCTTCCTTTTCATATTTGGTGTACAATTTTTCGAACTCATCACCGTAGACATCGGAA 5654 Query 178274 AGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTC 178333 || || ||||| ||| || |||| | | |||| |||| | ||| | ||| || ||| Sbjct 5653 AGGCCAGGAGCTTCAGAAGGTGAGAACAAAGTCCATGGACCATTTTCTTCCACACGCTTC 5594 Query 178334 ATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCATC 178384 ||||| || |||| |||| | || ||| | || | |||||| ||| Sbjct 5593 ATGAAAAGATCAGGAATCCAAAGAGCTGGGAACAAATCACGGGCTCTAATC 5543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149341557335